BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325975
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15180.1 | Symbols: | Peroxidase superfamily protein | chr5... 1480 0.0
> AT5G15180.1 | Symbols: | Peroxidase superfamily protein | chr5:4930519-4932363
FORWARD LENGTH=1184
Length=1184
Score = 1480 bits (801), Expect = 0.0
Identities = 929/992 (94%), Gaps = 4/992 (0%)
Strand=Plus/Plus
Query 1 ATGACTGCTTTGAAGATGACTATCTCTTGTTTCTT-TTTCCTTCAAGTAATATCGTGCTT 59
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 43 ATGGCTGCTTTGAAGATGACTATCTCTTGTTTCTTGTTT-CTTCAAGTAATATATTGCTT 101
Query 60 GCTCTCTTCATTTGCCCCAACAAATGTGCAAGGATTGCAAGTTGGGTTCTACGACAAGGC 119
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 102 GCTCTCTTCATTTGCTCCAACAAATGTGCAAGGATTGAAAGTTGGATTCTACGACAAGGC 161
Query 120 ATGCCCGAAAGCTGAGCTTATTGTCAAGAAGTCTGTCTTCGAGGCAATTAACAAGGATCC 179
|||||| ||||| |||||||||||||| ||||||||||||||||| | || || ||||
Sbjct 162 ATGCCCCAAAGCCGAGCTTATTGTCAAAAAGTCTGTCTTCGAGGCTGTGAAGAATGATCG 221
Query 180 AACACTTGGAGCTCCTTTGCTCAGAATGTTCTTCCACGATTGCTTCGTTCGGGGATGCGA 239
||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 222 GACAATTGCAGCTCCTTTGCTCAGGATGTTCTTCCACGATTGCTTCGTTAGGGGATGCGA 281
Query 240 AGGCTCGCTCTTGCTAGAGCTAAAGAACAAAAAAGATGAGAAAAACGCAATTCCTAACCT 299
||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 282 AGGGTCGGTATTGCTAGAGCTAAAGAACAAAAAAGATGAGAAAAACTCAATTCCTAACCT 341
Query 300 CACCCTTCGAGGATTTGAGATCATAGACAATGCCAAGGCAGCTCTAGAAAAGGAGTGTCC 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 342 CACCCTTCGAGGATTTGAGATCATAGACAATGTCAAGGCAGCTCTAGAAAAGGAGTGTCC 401
Query 360 GGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGTCGCTAGAGATGCAATGCTTGCACT 419
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 402 GGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGTCGCTAGAGACGCAATGGTTGCGCT 461
Query 420 CAATGGACCGTCGTGGGAGGTTGAAACGGGAAGAAGAGACGGTCTGGTTACAAACATCAC 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 462 CAATGGACCGTCGTGGGAGGTTGAAACGGGACGAAGAGACGGTCTGGTTACAAACATCAC 521
Query 480 TGAGGTCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATT 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TGAGGCCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATT 581
Query 540 CCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAGGTGGGCACACAATTGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAGGTGGGCACACAATTGG 641
Query 600 GCACGGACATTGTCCTCAAATCACGAACCGGCTCTACAATTTCACCGGCAAAGGAGATAG 659
| | ||||||||||| || ||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 642 GAATGGACATTGTCCACAGATCACAAACCGTCTCTACAACTTCACCGGAAAAGGAGATAG 701
Query 660 TGATCCGAACTTAGACACGAAATACGCAGCCAACCTCAGAAGAAAATGCAAGCCAACTGA 719
||| ||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||
Sbjct 702 TGACCCGAACTTAGACACGGAATACGCAGTCAAACTCAGAGGAAAATGCAAGCCAACTGA 761
Query 720 TACCACGACGGCTCTAGAAATGGATCCAGGAAGCTTCAAAACGTTTGATGAAAGCTACTT 779
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 762 TACCACAACGGCTCTAGAAATGGATCCAGGAAGCTTTAAAACGTTCGATGAAAGTTACTT 821
Query 780 CAAGCTTGTGTCTCAAAGAAGAGGGTTGTTTCAATCTGACGCAGCTCTTTTAGACAATCA 839
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 822 CAAGCTTGTGTCTCAAAGAAGAGGATTGTTTCAATCTGATGCAGCTCTTTTAGACAATCA 881
Query 840 AGAAACTAAGTCTTATCTTCTAAAGCACAT-GAATAGTGATAAGTCTACTTTCTTTAAAG 898
|||||||||||||||| |||| ||| | | |||||||||| |||||||||||||||||
Sbjct 882 AGAAACTAAGTCTTATGTTCTCAAG-AGTTTGAATAGTGATGGGTCTACTTTCTTTAAAG 940
Query 899 ATTTTGGTGTCTCTATGGTAAAGATGGGTCGGATTGGAGTTTTAACGGGTCAGGCTGGGG 958
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 941 ACTTTGGTGTCTCCATGGTAAAAATGGGTCGGATTGGAGTTTTAACGGGTCAGGTTGGGG 1000
Query 959 AAGTTCGCAAGAAGTGCAGAATGGTTAATTAA 990
||||||||||||||||||||||||||||||||
Sbjct 1001 AAGTTCGCAAGAAGTGCAGAATGGTTAATTAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5