BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326001
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15470.1 | Symbols: GAUT14 | galacturonosyltransferase 14 | ... 2643 0.0
AT3G01040.1 | Symbols: GAUT13 | galacturonosyltransferase 13 | ... 1807 0.0
> AT5G15470.1 | Symbols: GAUT14 | galacturonosyltransferase 14
| chr5:5021010-5024742 REVERSE LENGTH=2596
Length=2596
Score = 2643 bits (1431), Expect = 0.0
Identities = 1548/1604 (97%), Gaps = 9/1604 (1%)
Strand=Plus/Plus
Query 128 GGAGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATCACGATTTCGAGCAGCAATG 187
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 570 GGAGGATGCAGCTTCACATATCGCCGAGTATGAGAAGCATTACGATTTCGAGCAGCAATG 629
Query 188 AGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCT 689
Query 248 TCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCTTCATCCTCACCGCTCTTG 307
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 690 TCCACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTTTTCATTCTCACCGCTGTTG 749
Query 308 TTACCCTCGAAGGTGTCAACAAATGCTCCTCC----A----TT-GGGAGGCGGATAGGTC 358
||||||| || ||||||||||||||||||||| | || ||||||||||||||||
Sbjct 750 TTACCCTTGAGGGTGTCAACAAATGCTCCTCCATTGATTGTTTAGGGAGGCGGATAGGTC 809
Query 359 CGCGTCTTCTTGGTAGGGTAGATGATTCAGAGAGACTAGCTAGAGACTTTTATAAAATTC 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CACGTCTTCTTGGTAGGGTAGATGATTCAGAGAGACTAGCTAGAGACTTTTATAAAATTC 869
Query 419 TAAACGAAGTAAGTACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGTC 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TAAACGAAGTAAGCACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGTC 929
Query 479 AACTTGTTTCAGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGC 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AACTTGTTTCCGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGC 989
Query 539 GAGCCATGATGGAGAAGTTTGAACGGGATATGAGGGAATCGAAATTTGCAGAACTTATGA 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 990 GAGCCATGATGGAGAAGTTTGAACGTGATATGAGGGAATCGAAATTTGCAGAACTTATGA 1049
Query 599 ACAAGCACTTTGCAGCGAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGGCTGA 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1050 ACAAGCACTTTGCAGCAAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGACTGA 1109
Query 659 CAGATGAATATTCCTCGAATGCTCATGCTCGTAGACAACTTCCTTCTCCAGAGTTTCTCC 718
|||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1110 CAGATGAATATTCCTCCAATGCTCATGCTCGAAGACAGCTTCCTTCACCAGAGTTTCTCC 1169
Query 719 CTGTTCTTTCAGATAATGCTTACCACCATTTTATTCTGTCCACGGACAATATTTTGGCTG 778
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1170 CTGTTCTTTCAGATAATGCTTACCACCACTTTATTTTGTCCACGGACAATATTTTGGCTG 1229
Query 779 CCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTTTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTTTC 1289
Query 839 ACATCATCACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTCTG 898
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ACATCATTACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTCTG 1349
Query 899 TTGCGCCAGCTATTGTCGAGGTCAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGAGA 958
|||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTGCACCAGCAATTGTTGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGAGA 1409
Query 959 ATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGAACTATTATCATGGGA 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1410 ATGTTCCGGTTTTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGGACTATTATCATGGGA 1469
Query 1019 ATCATGTCGCTGGGGCAAACCTCACAGAAACAACTCCACGAACATTTGCTTCAAAATTGC 1078
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1470 ATCATGTCGCTGGGGCAAACCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGC 1529
Query 1079 AGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 AGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGC 1589
Query 1139 TTTTCCCGAACTTGGACAAGGTGGTCTTCTTAGACGATGATATAGTTGTCCAGGGAGACT 1198
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1590 TTTTCCCGAACTTGGACAAGGTGGTTTTCTTAGACGATGATATAGTTGTCCAGGGAGACT 1649
Query 1199 TAACTCCACTTTGGGATGTTGACCTTGGTGGTAATGTCAATGGAGCAGTAGAGACTTGCA 1258
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1650 TAACTCCACTTTGGGATGTTGACCTCGGTGGTAAGGTCAATGGGGCAGTAGAGACTTGCA 1709
Query 1259 GGGGTGAAGATGAATGGGTGATGTCAAAGCGTTTAAGGAACTACTTCAATTTCTCTCATC 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1710 GGGGTGAAGATGAATGGGTGATGTCAAAGCGTTTAAGGAACTACTTCAATTTCTCTCACC 1769
Query 1319 CGCTCATTGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATGAATGTGT 1378
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1770 CGCTCATCGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATGAATATCT 1829
Query 1379 TCGATCTACAAGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTGGCTTAGAG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 TCGATCTACAAGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTGGCTTAGAG 1889
Query 1439 AGAATCTAAAGTCGAATCTGACAATGTGGAAGCTTGGAACCTTGCCTCCTGCTCTGATCG 1498
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1890 AGAATCTAAAGTCAAATCTGACAATGTGGAAACTTGGAACCTTGCCTCCTGCTCTTATCG 1949
Query 1499 CGTTCAAGGGTCACGTTCACATAATAGACTCGTCATGGCATATGCTTGGATTAGGGTATC 1558
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1950 CGTTCAAGGGTCACGTACACATAATAGACTCGTCATGGCATATGCTAGGATTAGGCTACC 2009
Query 1559 AGAGCAAGACCAACATAGAACATGTGAAGAAAGCTGCAGTGATCCACTACAATGGGCAAT 1618
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 2010 AGAGCAAGACCAACATAGAAAATGTGAAGAAAGCAGCAGTGATCCACTACAATGGGCAGT 2069
Query 1619 CAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGGCCATTCTGGACAAAATACGTCA 1678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2070 CAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGGCCATTCTGGACCAAATACGTCA 2129
Query 1679 ACTACTCAAATGATTTCATAAAGAACTGTCACATATTGGAGTAG 1722
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2130 ACTACTCAAATGATTTCATCAAGAACTGTCACATATTGGAGTAG 2173
Score = 211 bits (114), Expect = 2e-53
Identities = 125/130 (96%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 1 ATGCGGTCTGGGAGAAGACCACAAGGAAGAAGAAAAGCGT-CAAGGAACGAAACAGAGAC 59
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 353 ATGCGGTCTGGGAGAAGACCACAAGGAAGAAGAATAGC-TATAAGGAACGAAACAGAGAC 411
Query 60 GGAATTGAGATCGAGAATCGGGGAGAAATCGGGATCGGAGAAGCGGAATCTGATCGGATC 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGAATTGAGATCGAGAATCGGAGAGAAATCGGGATCGGAGAAGCGGAATCTGATCGGATC 471
Query 120 TGATGTTGGG 129
||||||||||
Sbjct 472 TGATGTTGGG 481
> AT3G01040.1 | Symbols: GAUT13 | galacturonosyltransferase 13
| chr3:8957-12444 FORWARD LENGTH=2502
Length=2502
Score = 1807 bits (978), Expect = 0.0
Identities = 1407/1614 (87%), Gaps = 30/1614 (2%)
Strand=Plus/Plus
Query 130 AGGATGCAGCTTCACATATCGCCGAGCATGAGAAGCATCACGATTTCGAGCAGCAATGAG 189
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 433 AGGATGCAGCTTCACATATCGCCTAGCATGAGAAGCATTACGATATCGAGCAGCAATGAG 492
Query 190 TTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTACCGAACTCTCTTC 249
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 493 TTTATTGATTTGATGAAGATCAAAGTCGCAGCTCGTCACATCTCTTACCGAACTCTCTTC 552
Query 250 CACACCATCTTAATCCTCGCTTTCTTGTTGCCTTTTGTCTTCATCCTCACCGCTCTTGTT 309
||||| ||||||||||||||||||||||| |||||||| |||||||| |||||| |||||
Sbjct 553 CACACTATCTTAATCCTCGCTTTCTTGTTACCTTTTGTTTTCATCCTAACCGCTGTTGTT 612
Query 310 ACCCTCGAAGGTGTCAACAAATGCTCCTC----CA----TT-GGGAGGCGGATAGGTCCG 360
||||| |||||||||||||| |||||||| | || ||||||||| |||| ||
Sbjct 613 ACCCTTGAAGGTGTCAACAAGTGCTCCTCTTTTGATTGTTTCGGGAGGCGGCTAGGACCA 672
Query 361 CGTCTTCTTGGTAGGGTAGATGATTC--AG-AGAGACTAGCTAGAGACTTTTATAAAATT 417
||||||||||||||| |||||||||| || ||||||||| |||||| ||||| ||||||
Sbjct 673 CGTCTTCTTGGTAGGATAGATGATTCAGAGCAGAGACTAGTTAGAGATTTTTACAAAATT 732
Query 418 CTAAACGAAGTAAGTACTCAAGAAATTCCAGATGGTTTGAAGCTTCCAAATTCTTTTAGT 477
||||| |||||||| ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 733 CTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGAGTCTTTTAGT 792
Query 478 CAACTTGTTTCAGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTG 537
||||| ||||| ||||||||||| |||||||||||||| ||||||||||| || || |
Sbjct 793 CAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTT 852
Query 538 CGAGCCATGATGGAGAAGTTTGAACGGGATATGAGGGAATCGAAATTTGCAGAACTTATG 597
||||| ||| | |||||||||||| ||||| | |||||||| |||||||||||||| |||
Sbjct 853 CGAGCTATGGTAGAGAAGTTTGAAAGGGATTTAAGGGAATCCAAATTTGCAGAACTCATG 912
Query 598 AACAAGCACTTTGCAGCGAGTTCCATTCCCAAAGGCATTCATTGTCTCTCTCTAAGGCTG 657
|||||||||||||| || ||||| ||||| ||||| ||||| ||||||||| |||| ||
Sbjct 913 AACAAGCACTTTGCTGCAAGTTCAATTCCAAAAGGAATTCACTGTCTCTCTTTAAGACTA 972
Query 658 ACAGATGAATATTCCTCGAATGCTCATGCTCGTAGACAACTTCCTTCTCCAGAGTTTCTC 717
|| |||||||||||||| ||||||||||| || ||||| |||||||| || ||| |||||
Sbjct 973 ACCGATGAATATTCCTCCAATGCTCATGCCCGGAGACAGCTTCCTTCCCCGGAGCTTCTC 1032
Query 718 CCTGTTCTTTCAGATAATGCTTACCACCATTTTATTCT-GTCCACGGACAATATTTTGGC 776
|||||||| ||||| |||||||||||||||||| |||| | | || || ||||| || ||
Sbjct 1033 CCTGTTCTCTCAGACAATGCTTACCACCATTTTGTTCTAG-CTACAGATAATATCTTAGC 1091
Query 777 TGCCTCAGTTGTGGTCTCATCCGCTGTTCAGTCATCTTCAAAACCCGAGAAAATTGTCTT 836
||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1092 TGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTCAAAACCCGAGAAAATTGTCTT 1151
Query 837 TCACATCATCACAGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCGCTTAATTC 896
|| | ||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1152 CCATGTTATCACAGACAAGAAAACCTATGCGGGTATGCATTCTTGGTTTGCACTCAATTC 1211
Query 897 TGTTGCGCCAGCTATTGTCGAGGTCAAAGGTGTTCATCAGTTTGACTGGTTGACGAGAGA 956
|||||| || || ||||| || || ||| | |||||||||||||| ||||| || |||||
Sbjct 1212 TGTTGCTCCTGCGATTGTTGAAGTGAAAAGCGTTCATCAGTTTGATTGGTTAACAAGAGA 1271
Query 957 GAATGTTCCGGTT-TTGGAAGCTGTGGAAAGCCATAATGGTGTCAGGAACTATTATCATG 1015
||||||||| ||| || |||||||||||||||||||| || |||| || ||||| ||||
Sbjct 1272 GAATGTTCCAGTTCTT-GAAGCTGTGGAAAGCCATAACAGTATCAGAAATTATTACCATG 1330
Query 1016 GGAATCATGTCGCTGGGGCAAACCTCA-CAGAAACAACTCCACGAACATTTGCTTCAAAA 1074
|||||||| | ||||| |||||||||| | |||||||| || |||||||||||||| |||
Sbjct 1331 GGAATCATATTGCTGGTGCAAACCTCAGC-GAAACAACCCCTCGAACATTTGCTTCGAAA 1389
Query 1075 TTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCA 1134
||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1390 CTGCAGTCAAGAAGTCCCAAATACATATCTTTGCTCAACCATCTTAGAATATATCTACCA 1449
Query 1135 GAGCTTTTCCCGAACTTGGACAAGGTGGTCTTCTTAGACGATGATATAGTTG-TCCAGGG 1193
|||||||| |||||||| |||||||| || |||||||| ||||||||||| | | |||
Sbjct 1450 GAGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGT-GATACAGAA 1508
Query 1194 AGACTTAACTCCACTTTGGGATGTTGACCTTGGTGGTAATGTCAATGGAGCAGTAGAGAC 1253
||| ||| |||| ||||||||| |||||||| || || || |||||||| || |||||
Sbjct 1509 AGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTAATGGAGCTGTGGAGAC 1568
Query 1254 TTG-CAGGGGTGAAGATGAATGGGTGATGTCAAAGCGT-TTAAGGAACTACTTCAATTTC 1311
||| | | || ||||| | |||||| |||||||||||| ||| ||||||||||||||||
Sbjct 1569 TTGTC-GAGGAGAAGACGTATGGGTTATGTCAAAGCGTCTTA-GGAACTACTTCAATTTT 1626
Query 1312 TCTCATCCGCTCATTGCAAAGCATTTAGATCCTGAAGAATGTGCTTGGGCATATGGTATG 1371
||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 1627 TCTCACCCGCTCATCGCAAAGCATTTAGATCCCGAAGAATGTGCTTGGGCTTATGGAATG 1686
Query 1372 AATGTGTTCGATCTACA-AGCTTGGAGGAAAACAAATATCAGAGAAACGTATCACTCTTG 1430
||| | || ||||||| | |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1687 AATATCTTTGATCTACGGA-CTTGGAGGAAGACAAATATCAGAGAAACGTATCATTCTTG 1745
Query 1431 GCTTAGAGAGAATCTAAAGTCGAATCTGACAATGTGGAAGCTTGGAACCTTGCCTCCTGC 1490
||||| ||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1746 GCTTAAAGAGAATCTGAAGTCGAATCTAACAATGTGGAAACTTGGAACATTGCCTCCTGC 1805
Query 1491 TCTGATCGCGTTCAAGGGTCACGTTCA-CATAATAGACTCGTCATGGCATATGCTTGGAT 1549
||| || || || || ||||| ||||| | |||||| || || ||||||||||||||||
Sbjct 1806 TCTAATAGCATTTAAAGGTCATGTTCAGCC-AATAGATTCCTCTTGGCATATGCTTGGAT 1864
Query 1550 TAGGGTATCAGAGCAAGACCAACATAGAACATGTGAAGAAAGCTGCAGTGATCCACTACA 1609
|||| |||||||||||||||||| ||||| ||| |||||||||||||||||| || ||||
Sbjct 1865 TAGGTTATCAGAGCAAGACCAACTTAGAAAATGCGAAGAAAGCTGCAGTGATTCATTACA 1924
Query 1610 ATGGGCAATCAAAGCCATGGCTGGAGATTGGTTTCGAGCATCTGCGG-CCATTCTGGACA 1668
|||| ||||||||||| ||||| ||||| |||||||||||||| | | ||||||||||||
Sbjct 1925 ATGGCCAATCAAAGCCGTGGCTTGAGATAGGTTTCGAGCATCT-CAGACCATTCTGGACA 1983
Query 1669 AAATACGTCAACTACTCAAATGATTTCATAAAGAACTGTCACATATTGGAGTAG 1722
||||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||
Sbjct 1984 AAATATGTTAACTACTCCAATGATTTCATTAAGAATTGTCATATCTTGGAATAG 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5