BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326016 Length=1293 Score E Sequences producing significant alignments: (Bits) Value AT5G15660.1 | Symbols: | F-box and associated interaction doma... 1375 0.0 AT1G26515.1 | Symbols: | F-box and associated interaction doma... 647 0.0 AT5G15670.1 | Symbols: | F-box family protein | chr5:5099595-5... 289 6e-77 > AT5G15660.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:5095652-5097041 FORWARD LENGTH=1317 Length=1317 Score = 1375 bits (744), Expect = 0.0 Identities = 1041/1179 (88%), Gaps = 41/1179 (3%) Strand=Plus/Plus Query 1 ATGAGAAGACGGCCGAGCAAAAAGAGCAAAACCGAGAACAACAAG-GATCTACACACGTC 59 |||||||||| | | |||||||||| |||||||||||||||| || ||| | | ||||| Sbjct 1 ATGAGAAGAC-G-C-AGCAAAAAGATCAAAACCGAGAACAAC-AGCAATCCAGAAACGTC 56 Query 60 AGAAGAGAGAATCAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTCG-GA 118 |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | | Sbjct 57 GGAAGAGAGAAACAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATACTT-GAAA 115 Query 119 GATTGCCTGCGAAATCTGTAGCTAGGTTTCTCACTGTATCCAAGTTGTGGGCCACAACTA 178 |||||||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||| Sbjct 116 GATTGCCTTTGAAATCTGTAGCCAGGTTTCTCACAGTATCCAAGTTATGGGCAACAACTA 175 Query 179 TCCGCAGTCCAGATTTCATCAAATCTTACCCGTTTGGATCTTCGTCGAAGCCTCGTACCC 238 | |||||||||||||||| |||||||||| | ||||||||||||| |||||||||||| Sbjct 176 TACGCAGTCCAGATTTCAGAAAATCTTACCGGGGTGGATCTTCGTCGGAGCCTCGTACCC 235 Query 239 TAATCGTTTGCGACTTAAATTATAAGGAACCAAACCCAAATG-TGCATTTCTTCAGGCCG 297 ||||||||| |||| |||||| |||||||||||||||||| | ||||||||||||||||| Sbjct 236 TAATCGTTTCCGACCTAAATTTTAAGGAACCAAACCCAAA-GTTGCATTTCTTCAGGCCG 294 Query 298 TCTTCTTCATCATCAACATCAACGTCTCTTCTATCACGTGTGACATGTCCGTTCACATAT 357 || | || || ||||| ||||| |||||||| || |||||||||||||||||||| Sbjct 295 ---TC-T-AT-AT---CATCACCGTCTTTTCTATCAAGTCTGACATGTCCGTTCACATAT 345 Query 358 CCTCGTCAC-ATGGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGG 416 ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 CCTCGGCACGA-AGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGG 404 Query 417 TACAGAGCAAATCGTAACCAACCCCATC-ACTGGTAAGTTCATAACTTTACCAAAACCTA 475 |||||| |||||||||| ||||||| | ||||| || |||||||||||||||| ||| | Sbjct 405 TACAGACCAAATCGTAATTAACCCCA-CGACTGGAAAATTCATAACTTTACCAAGACCCA 463 Query 476 GAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATGATTCAGTTAGTGATCAATACA 535 |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| Sbjct 464 AAACAAGGAGAAAGCTCGTAATAAGTTTTTTCGGGTATGATTCAGTGAGTGATCAATACA 523 Query 536 AAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCGGAAGAAGCATCATCTCAACATC 595 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 524 AAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCAGAAGAAGCATCATCTCAACATC 583 Query 596 AAGTGTACACATTGGGAGCTAAAAAGAAATCATGGAAAATGATCAATTGTAGCATCCCTC 655 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 584 AAGTGTACACATTGGGAGCTAAACAGAAATCATGGAAAATGATTAATTGTAGCATCCCTC 643 Query 656 ACCGTCCTTGGTCGTGGAACGGTGTATGCATAAATGGTGTTGTGTATTACATTGCTAAAA 715 ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 644 ACCGTCCTTGGTCGTGGAACGCCGTGTGCATAAATGGTGTTGTGTATTACATTGCTAAAA 703 Query 716 CGGGGGCGGGAATGTTGCAG-CTGAGCTTAATGAGATTTGATTTGAAGTCTGACGATCTG 774 |||||| ||| ||||| | | | | ||||||||||||||||||||||||||||| || || Sbjct 704 CGGGGGAGGGTATGTTTC-GTCGGTGCTTAATGAGATTTGATTTGAAGTCTGACAATTTG 762 Query 775 GATCTTTTTACTAGTTTACCTGAAGAGATTGAAACAAGTCTATATGATTGCCTTTTGATA 834 ||||||| |||| |||||||||||||||| ||||||||||| |||||| | ||||||| Sbjct 763 GATCTTTGCACTATTTTACCTGAAGAGATTCAAACAAGTCTACATGATTACTTTTTGATC 822 Query 835 AACTACGAGGGGAAAGTAGCCATACCCACTCGCCCTACAGATA-ATACATGTGATGTGTG 893 |||||| ||||||||||||||||||||| || |||| | | |||||| ||||||||| Sbjct 823 AACTACAAGGGGAAAGTAGCCATACCCAATCAACCTA-ATTTCTATACATATGATGTGTG 881 Query 894 GGTTATGAATCAAGAAGGTGGAAAACTTGAATGGTTGAAGAAAATAAGTTTCAGTACTAA 953 |||||||||||| |||||||||||| |||||||||||||||| |||| ||||| || ||| Sbjct 882 GGTTATGAATCAGGAAGGTGGAAAAATTGAATGGTTGAAGAATATAACTTTCACTATTAA 941 Query 954 ACCTTGGAAGGGTTCA-T--GTTATCTAGTCGTCACAGGCACTACTCCTACGGGTGAGTT 1010 |||| ||||||||| | |||||||| |||||||||||||||||| |||||||||||| Sbjct 942 ACCTCGGAAGGGTTTTGTTCGTTATCTATTCGTCACAGGCACTACTCATACGGGTGAGTT 1001 Query 1011 TATTTTGGCACCAACG-CACTATTAT-GATTCGTTTTATGTCTTCCATTGCAATCCCGAC 1068 |||||||||||||||| | |||| | ||| ||||||||||||||||| |||||||||| Sbjct 1002 TATTTTGGCACCAACGTC-CTAT-ACCGATGAGTTTTATGTCTTCCATTACAATCCCGAC 1059 Query 1069 TTGAATTGTTTTAGAAAGATTACGATTCAAGCACCCGGAGTCCCGAAGTATAATTAT-CA 1127 ||||| ||||||||||||| | | |||||||||||||||| |||| || || | | Sbjct 1060 ATGAATAGTTTTAGAAAGATAAGGGTTCAAGCACCCGGAGTT---AAGTTTAGTTTTGC- 1115 Query 1128 TCAGAAA-CTTGCATTTGTTTTTTCGGATTACA-TTTAT 1164 ||||||| ||| || |||||||||||||| ||| ||||| Sbjct 1116 TCAGAAAGCTT-CAGTTGTTTTTTCGGATCACAGTTTAT 1153 > AT1G26515.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:9161810-9162910 REVERSE LENGTH=1101 Length=1101 Score = 647 bits (350), Expect = 0.0 Identities = 659/800 (82%), Gaps = 54/800 (7%) Strand=Plus/Plus Query 301 TCTTCATCATCAACATCAACGTCTCTTCTATCACGTGTGACATGTCCGT--T-CACATAT 357 ||||| |||||| ||||||||||| ||||||| ||| |||||||||||| | | |||| Sbjct 310 TCTTCCTCATCATCATCAACGTCTTTTCTATCGCGTTTGACATGTCCGTCGTCCCCATAC 369 Query 358 CCTCGTCACATGGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGGT 417 |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| Sbjct 370 CCTCGTCACATGGAGTACTATTGTCATTATGTAAATGGATTGATAAGCGTTGGATATGGT 429 Query 418 AC-AGAGCAAATCGTAACCAACCCCATCACTGGTAAG-TTCATAACTTTACCAAAACCT- 474 | ||||||||||||||||||||| | ||||||| || |||||||||||||| || | Sbjct 430 -CGAGAGCAAATCGTAACCAACCCTAGCACTGGT-AGATTCATAACTTTACC-AAGTGTC 486 Query 475 AGAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATGATTCAGTTAGTGATCAATAC 534 ||||||| ||||| |||||||| |||| |||||||||||||| ||| ||||||||||||| Sbjct 487 AGAACAAAGAGAAGGCTCGTAAAAAGTTTTTTCGGGTATGATCCAGCTAGTGATCAATAC 546 Query 535 AAAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCGGAAGAAGCATCATCTCAACAT 594 |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||| Sbjct 547 AAAGTGTTGTGCATGACGGAAAGACTTTATGGCCATCAAGAAGACCCATCTTCTCAACAT 606 Query 595 CAAGTGTACACATTGGGAGCTAAAAAGAAATCATGGAAAATGATCA-ATTG---TAGCAT 650 ||||||| ||||||||||| |||||| | ||||||||||| | | || | || ||| Sbjct 607 CAAGTGTTCACATTGGGAG-TAAAAA-AGC-CATGGAAAATGTT-AGATCGCACTACCAT 662 Query 651 CCCT---CACCGTCCTTGGTCGTGGAACGGTGTATGCATAAATGGTGTTGTGTATTACAT 707 ||| |||||||||||| | | |||||||| |||||| |||||||||| |||||||| Sbjct 663 TCCTGATCACCGTCCTTGGAC-T--AACGGTGTGTGCATAGATGGTGTTGTCTATTACAT 719 Query 708 TGCTAAAACGGGGGCG-GGAATGTTGCAGCTGAGCTTAATGAGATTTGATTTGAAGTCTG 766 ||||||||||||| | || |||| || |||||||||||||||| |||||||| | || Sbjct 720 TGCTAAAACGGGG-CAAGGTATGTCACAACTGAGCTTAATGAGATATGATTTGAGGGATG 778 Query 767 ACGATCTGGATCTTTTTACTAGTTTACCTGAAGAGATT-GAAA-C-AAGTCTATATGATT 823 || || || || |||||| ||||||||||||||||||| ||| | ||||||||| | | Sbjct 779 ACAATTTGAATGTTTTTATTAGTTTACCTGAAGAGATTCGAACTCCAAGTCTATAC-AGT 837 Query 824 G-C-CTTTTGAT-AAACTACGAGGGGAAAGTAGCCATACCCACTCGCCCT-ACAG-ATAA 878 | | |||| || |||||||||||||||| |||||||| ||| || | | ||| ||| Sbjct 838 GACACTTT--ATTAAACTACGAGGGGAAACTAGCCATAGCCATTC-CAGTTACATCATA- 893 Query 879 TACATGTGATGTGTGGGTTATGAATCAAGAAGGTGGAAAACTTGAATGGTTGAAGAAAAT 938 || || |||||||||||||||| |||| || || | ||||| |||||||||||||||||| Sbjct 894 TATATTTGATGTGTGGGTTATGGATCAGGATGGCGAAAAACATGAATGGTTGAAGAAAAT 953 Query 939 AAGTTTCAGTACTAAACCTTGGAAGGGTTCATGTT-ATC--TAGT-CG--TCACAGGCAC 992 || ||||| || | |||||||| || |||||| || | | || | || | | |||||| Sbjct 954 AACTTTCAATATTGAACCTTGGCAGAGTTCAT-TTGA-CGATA-TACGCATTAAAGGCAC 1010 Query 993 TACTCCTACGGGTGAGTTTATTTTGGCACCAACGCACTATTAT-G--AT--TC-GTTTTA 1046 ||||| ||||||||||||||| || ||||||| | || ||||| | || | |||||| Sbjct 1011 TACTCTTACGGGTGAGTTTATCTTCGCACCAATGAACAATTATTGTGATGATGAGTTTTA 1070 Query 1047 TGTCTTCCATTGCAA-TCCC 1065 ||||||||||| ||| |||| Sbjct 1071 TGTCTTCCATTACAAATCCC 1090 > AT5G15670.1 | Symbols: | F-box family protein | chr5:5099595-5100407 FORWARD LENGTH=645 Length=645 Score = 289 bits (156), Expect = 6e-77 Identities = 211/237 (89%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 1 ATGAGAAGACGGCCGAGCAAAAAGAGCAAAACCGAGAACAACAAGGATCTACACACGTCA 60 |||||||||| | | | |||||||| |||||||| || || | | ||| | | |||| Sbjct 4 ATGAGAAGAC-G-C-AACAAAAAGACCAAAACCGTGATCAGC-A--ATCCAGAAACGTTG 57 Query 61 GAAGAGAGAATCAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTCGGAGA 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 58 GAAGAGAGAAACAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTGGGAGA 117 Query 121 TTGCCTGCGAAATCTGTAGCTAGGTTTCTCACTGTATCCAAGTTGTGGGCCACAACTATC 180 |||||||| ||||||||||||||||||||||| ||||||||||| ||||| || | |||| Sbjct 118 TTGCCTGCCAAATCTGTAGCTAGGTTTCTCACAGTATCCAAGTTATGGGCAACTAGTATC 177 Query 181 CGCAGTCCAGATTTCATCAAATCTTACCCGTTTGGATCTTCGTCGAAGCCTCGTACC 237 ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 178 CGCAGTCTAGATTTCATCAAATCTTACCCGCTTGGATCTTCGTCGAAGCCTCGTACC 234 Score = 285 bits (154), Expect = 7e-76 Identities = 296/361 (82%), Gaps = 24/361 (7%) Strand=Plus/Plus Query 456 CATAACTTTACCAA-AACCTAGAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATG 514 |||| ||||||||| | | | ||| ||||||| | | | || |||| |||||||||||| Sbjct 282 CATACCTTTACCAAGAGTC-AAAACCAGGAGAACGATAGCAACAAGTTTTTTCGGGTATG 340 Query 515 ATTCAGTTAGTGATCAATACAAAGTGTTGTGCATGACGG--AAAGACTGCGTGGCCATCC 572 |||| |||||||||||||||||||||||||| ||||||| |||| | | ||| || | Sbjct 341 ATTCTGTTAGTGATCAATACAAAGTGTTGTGTATGACGGTAAAAG-C-GTATGGTGAT-C 397 Query 573 GGA-AGAAGCA-TCATCTCAACATCAAGTGTACACATTGGGAGCTAAAAAGAAATCATGG 630 || || | | ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 398 TGAGGGATG-AGTCATCTCAACATCAAGTATTCACATTGGGAGCTAAAAAGAAATCATTC 456 Query 631 AAAATGATCA-AT--T-GTAGCATCCCTCACCGTCCTTGGTCGTGGAACGGTGTATGCAT 686 | |||||| | || | ||| || |||||||||||||| || | |||||||| ||||| Sbjct 457 AGAATGAT-AGATACTAGTATTATTCCTCACCGTCCTTGCTC-T--AACGGTGTGTGCAT 512 Query 687 AAATGGTGTTGTGTATTACATTGCTAAAACGGGGGCGGGAATGTTGCAGCTGA-GCTTAA 745 | || ||||||||||||| |||||||||||||||||||||||||||| || | || ||| Sbjct 513 AGATAGTGTTGTGTATTATGTTGCTAAAACGGGGGCGGGAATGTTGCATCT-ATGCATAA 571 Query 746 TGAGATTTGATTTGAAGT-CTGACGATCT-GGATCTTTTTACTAGTTTACCTGAAGAGAT 803 |||||||||| |||| || |||| || | |||||||||||||||||| ||| ||||||| Sbjct 572 TGAGATTTGACTTGA-GTTCTGAA-ATATTGGATCTTTTTACTAGTTTGCCTCAAGAGAT 629 Query 804 T 804 | Sbjct 630 T 630 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63604090515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5