BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326016
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15660.1 | Symbols: | F-box and associated interaction doma... 1375 0.0
AT1G26515.1 | Symbols: | F-box and associated interaction doma... 647 0.0
AT5G15670.1 | Symbols: | F-box family protein | chr5:5099595-5... 289 6e-77
> AT5G15660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:5095652-5097041 FORWARD LENGTH=1317
Length=1317
Score = 1375 bits (744), Expect = 0.0
Identities = 1041/1179 (88%), Gaps = 41/1179 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAGACGGCCGAGCAAAAAGAGCAAAACCGAGAACAACAAG-GATCTACACACGTC 59
|||||||||| | | |||||||||| |||||||||||||||| || ||| | | |||||
Sbjct 1 ATGAGAAGAC-G-C-AGCAAAAAGATCAAAACCGAGAACAAC-AGCAATCCAGAAACGTC 56
Query 60 AGAAGAGAGAATCAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTCG-GA 118
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 57 GGAAGAGAGAAACAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATACTT-GAAA 115
Query 119 GATTGCCTGCGAAATCTGTAGCTAGGTTTCTCACTGTATCCAAGTTGTGGGCCACAACTA 178
|||||||| |||||||||||| ||||||||||| ||||||||||| ||||| |||||||
Sbjct 116 GATTGCCTTTGAAATCTGTAGCCAGGTTTCTCACAGTATCCAAGTTATGGGCAACAACTA 175
Query 179 TCCGCAGTCCAGATTTCATCAAATCTTACCCGTTTGGATCTTCGTCGAAGCCTCGTACCC 238
| |||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||
Sbjct 176 TACGCAGTCCAGATTTCAGAAAATCTTACCGGGGTGGATCTTCGTCGGAGCCTCGTACCC 235
Query 239 TAATCGTTTGCGACTTAAATTATAAGGAACCAAACCCAAATG-TGCATTTCTTCAGGCCG 297
||||||||| |||| |||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 236 TAATCGTTTCCGACCTAAATTTTAAGGAACCAAACCCAAA-GTTGCATTTCTTCAGGCCG 294
Query 298 TCTTCTTCATCATCAACATCAACGTCTCTTCTATCACGTGTGACATGTCCGTTCACATAT 357
|| | || || ||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 295 ---TC-T-AT-AT---CATCACCGTCTTTTCTATCAAGTCTGACATGTCCGTTCACATAT 345
Query 358 CCTCGTCAC-ATGGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGG 416
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CCTCGGCACGA-AGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGG 404
Query 417 TACAGAGCAAATCGTAACCAACCCCATC-ACTGGTAAGTTCATAACTTTACCAAAACCTA 475
|||||| |||||||||| ||||||| | ||||| || |||||||||||||||| ||| |
Sbjct 405 TACAGACCAAATCGTAATTAACCCCA-CGACTGGAAAATTCATAACTTTACCAAGACCCA 463
Query 476 GAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATGATTCAGTTAGTGATCAATACA 535
|||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 464 AAACAAGGAGAAAGCTCGTAATAAGTTTTTTCGGGTATGATTCAGTGAGTGATCAATACA 523
Query 536 AAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCGGAAGAAGCATCATCTCAACATC 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 524 AAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCAGAAGAAGCATCATCTCAACATC 583
Query 596 AAGTGTACACATTGGGAGCTAAAAAGAAATCATGGAAAATGATCAATTGTAGCATCCCTC 655
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 584 AAGTGTACACATTGGGAGCTAAACAGAAATCATGGAAAATGATTAATTGTAGCATCCCTC 643
Query 656 ACCGTCCTTGGTCGTGGAACGGTGTATGCATAAATGGTGTTGTGTATTACATTGCTAAAA 715
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 644 ACCGTCCTTGGTCGTGGAACGCCGTGTGCATAAATGGTGTTGTGTATTACATTGCTAAAA 703
Query 716 CGGGGGCGGGAATGTTGCAG-CTGAGCTTAATGAGATTTGATTTGAAGTCTGACGATCTG 774
|||||| ||| ||||| | | | | ||||||||||||||||||||||||||||| || ||
Sbjct 704 CGGGGGAGGGTATGTTTC-GTCGGTGCTTAATGAGATTTGATTTGAAGTCTGACAATTTG 762
Query 775 GATCTTTTTACTAGTTTACCTGAAGAGATTGAAACAAGTCTATATGATTGCCTTTTGATA 834
||||||| |||| |||||||||||||||| ||||||||||| |||||| | |||||||
Sbjct 763 GATCTTTGCACTATTTTACCTGAAGAGATTCAAACAAGTCTACATGATTACTTTTTGATC 822
Query 835 AACTACGAGGGGAAAGTAGCCATACCCACTCGCCCTACAGATA-ATACATGTGATGTGTG 893
|||||| ||||||||||||||||||||| || |||| | | |||||| |||||||||
Sbjct 823 AACTACAAGGGGAAAGTAGCCATACCCAATCAACCTA-ATTTCTATACATATGATGTGTG 881
Query 894 GGTTATGAATCAAGAAGGTGGAAAACTTGAATGGTTGAAGAAAATAAGTTTCAGTACTAA 953
|||||||||||| |||||||||||| |||||||||||||||| |||| ||||| || |||
Sbjct 882 GGTTATGAATCAGGAAGGTGGAAAAATTGAATGGTTGAAGAATATAACTTTCACTATTAA 941
Query 954 ACCTTGGAAGGGTTCA-T--GTTATCTAGTCGTCACAGGCACTACTCCTACGGGTGAGTT 1010
|||| ||||||||| | |||||||| |||||||||||||||||| ||||||||||||
Sbjct 942 ACCTCGGAAGGGTTTTGTTCGTTATCTATTCGTCACAGGCACTACTCATACGGGTGAGTT 1001
Query 1011 TATTTTGGCACCAACG-CACTATTAT-GATTCGTTTTATGTCTTCCATTGCAATCCCGAC 1068
|||||||||||||||| | |||| | ||| ||||||||||||||||| ||||||||||
Sbjct 1002 TATTTTGGCACCAACGTC-CTAT-ACCGATGAGTTTTATGTCTTCCATTACAATCCCGAC 1059
Query 1069 TTGAATTGTTTTAGAAAGATTACGATTCAAGCACCCGGAGTCCCGAAGTATAATTAT-CA 1127
||||| ||||||||||||| | | |||||||||||||||| |||| || || | |
Sbjct 1060 ATGAATAGTTTTAGAAAGATAAGGGTTCAAGCACCCGGAGTT---AAGTTTAGTTTTGC- 1115
Query 1128 TCAGAAA-CTTGCATTTGTTTTTTCGGATTACA-TTTAT 1164
||||||| ||| || |||||||||||||| ||| |||||
Sbjct 1116 TCAGAAAGCTT-CAGTTGTTTTTTCGGATCACAGTTTAT 1153
> AT1G26515.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:9161810-9162910 REVERSE LENGTH=1101
Length=1101
Score = 647 bits (350), Expect = 0.0
Identities = 659/800 (82%), Gaps = 54/800 (7%)
Strand=Plus/Plus
Query 301 TCTTCATCATCAACATCAACGTCTCTTCTATCACGTGTGACATGTCCGT--T-CACATAT 357
||||| |||||| ||||||||||| ||||||| ||| |||||||||||| | | ||||
Sbjct 310 TCTTCCTCATCATCATCAACGTCTTTTCTATCGCGTTTGACATGTCCGTCGTCCCCATAC 369
Query 358 CCTCGTCACATGGAGTACTATTATCATCATGTTAATGGATTGATAAGCGTTGGATATGGT 417
|||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 370 CCTCGTCACATGGAGTACTATTGTCATTATGTAAATGGATTGATAAGCGTTGGATATGGT 429
Query 418 AC-AGAGCAAATCGTAACCAACCCCATCACTGGTAAG-TTCATAACTTTACCAAAACCT- 474
| ||||||||||||||||||||| | ||||||| || |||||||||||||| || |
Sbjct 430 -CGAGAGCAAATCGTAACCAACCCTAGCACTGGT-AGATTCATAACTTTACC-AAGTGTC 486
Query 475 AGAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATGATTCAGTTAGTGATCAATAC 534
||||||| ||||| |||||||| |||| |||||||||||||| ||| |||||||||||||
Sbjct 487 AGAACAAAGAGAAGGCTCGTAAAAAGTTTTTTCGGGTATGATCCAGCTAGTGATCAATAC 546
Query 535 AAAGTGTTGTGCATGACGGAAAGACTGCGTGGCCATCCGGAAGAAGCATCATCTCAACAT 594
|||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||
Sbjct 547 AAAGTGTTGTGCATGACGGAAAGACTTTATGGCCATCAAGAAGACCCATCTTCTCAACAT 606
Query 595 CAAGTGTACACATTGGGAGCTAAAAAGAAATCATGGAAAATGATCA-ATTG---TAGCAT 650
||||||| ||||||||||| |||||| | ||||||||||| | | || | || |||
Sbjct 607 CAAGTGTTCACATTGGGAG-TAAAAA-AGC-CATGGAAAATGTT-AGATCGCACTACCAT 662
Query 651 CCCT---CACCGTCCTTGGTCGTGGAACGGTGTATGCATAAATGGTGTTGTGTATTACAT 707
||| |||||||||||| | | |||||||| |||||| |||||||||| ||||||||
Sbjct 663 TCCTGATCACCGTCCTTGGAC-T--AACGGTGTGTGCATAGATGGTGTTGTCTATTACAT 719
Query 708 TGCTAAAACGGGGGCG-GGAATGTTGCAGCTGAGCTTAATGAGATTTGATTTGAAGTCTG 766
||||||||||||| | || |||| || |||||||||||||||| |||||||| | ||
Sbjct 720 TGCTAAAACGGGG-CAAGGTATGTCACAACTGAGCTTAATGAGATATGATTTGAGGGATG 778
Query 767 ACGATCTGGATCTTTTTACTAGTTTACCTGAAGAGATT-GAAA-C-AAGTCTATATGATT 823
|| || || || |||||| ||||||||||||||||||| ||| | ||||||||| | |
Sbjct 779 ACAATTTGAATGTTTTTATTAGTTTACCTGAAGAGATTCGAACTCCAAGTCTATAC-AGT 837
Query 824 G-C-CTTTTGAT-AAACTACGAGGGGAAAGTAGCCATACCCACTCGCCCT-ACAG-ATAA 878
| | |||| || |||||||||||||||| |||||||| ||| || | | ||| |||
Sbjct 838 GACACTTT--ATTAAACTACGAGGGGAAACTAGCCATAGCCATTC-CAGTTACATCATA- 893
Query 879 TACATGTGATGTGTGGGTTATGAATCAAGAAGGTGGAAAACTTGAATGGTTGAAGAAAAT 938
|| || |||||||||||||||| |||| || || | ||||| ||||||||||||||||||
Sbjct 894 TATATTTGATGTGTGGGTTATGGATCAGGATGGCGAAAAACATGAATGGTTGAAGAAAAT 953
Query 939 AAGTTTCAGTACTAAACCTTGGAAGGGTTCATGTT-ATC--TAGT-CG--TCACAGGCAC 992
|| ||||| || | |||||||| || |||||| || | | || | || | | ||||||
Sbjct 954 AACTTTCAATATTGAACCTTGGCAGAGTTCAT-TTGA-CGATA-TACGCATTAAAGGCAC 1010
Query 993 TACTCCTACGGGTGAGTTTATTTTGGCACCAACGCACTATTAT-G--AT--TC-GTTTTA 1046
||||| ||||||||||||||| || ||||||| | || ||||| | || | ||||||
Sbjct 1011 TACTCTTACGGGTGAGTTTATCTTCGCACCAATGAACAATTATTGTGATGATGAGTTTTA 1070
Query 1047 TGTCTTCCATTGCAA-TCCC 1065
||||||||||| ||| ||||
Sbjct 1071 TGTCTTCCATTACAAATCCC 1090
> AT5G15670.1 | Symbols: | F-box family protein | chr5:5099595-5100407
FORWARD LENGTH=645
Length=645
Score = 289 bits (156), Expect = 6e-77
Identities = 211/237 (89%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAGACGGCCGAGCAAAAAGAGCAAAACCGAGAACAACAAGGATCTACACACGTCA 60
|||||||||| | | | |||||||| |||||||| || || | | ||| | | ||||
Sbjct 4 ATGAGAAGAC-G-C-AACAAAAAGACCAAAACCGTGATCAGC-A--ATCCAGAAACGTTG 57
Query 61 GAAGAGAGAATCAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTCGGAGA 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 58 GAAGAGAGAAACAAGTTTGATGAAATCCCTCATGACCTAGTGATCGAGATTCTTGGGAGA 117
Query 121 TTGCCTGCGAAATCTGTAGCTAGGTTTCTCACTGTATCCAAGTTGTGGGCCACAACTATC 180
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| || | ||||
Sbjct 118 TTGCCTGCCAAATCTGTAGCTAGGTTTCTCACAGTATCCAAGTTATGGGCAACTAGTATC 177
Query 181 CGCAGTCCAGATTTCATCAAATCTTACCCGTTTGGATCTTCGTCGAAGCCTCGTACC 237
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 CGCAGTCTAGATTTCATCAAATCTTACCCGCTTGGATCTTCGTCGAAGCCTCGTACC 234
Score = 285 bits (154), Expect = 7e-76
Identities = 296/361 (82%), Gaps = 24/361 (7%)
Strand=Plus/Plus
Query 456 CATAACTTTACCAA-AACCTAGAACAAGGAGAAAGCTCGTAAGAAGTCTTTTCGGGTATG 514
|||| ||||||||| | | | ||| ||||||| | | | || |||| ||||||||||||
Sbjct 282 CATACCTTTACCAAGAGTC-AAAACCAGGAGAACGATAGCAACAAGTTTTTTCGGGTATG 340
Query 515 ATTCAGTTAGTGATCAATACAAAGTGTTGTGCATGACGG--AAAGACTGCGTGGCCATCC 572
|||| |||||||||||||||||||||||||| ||||||| |||| | | ||| || |
Sbjct 341 ATTCTGTTAGTGATCAATACAAAGTGTTGTGTATGACGGTAAAAG-C-GTATGGTGAT-C 397
Query 573 GGA-AGAAGCA-TCATCTCAACATCAAGTGTACACATTGGGAGCTAAAAAGAAATCATGG 630
|| || | | ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 398 TGAGGGATG-AGTCATCTCAACATCAAGTATTCACATTGGGAGCTAAAAAGAAATCATTC 456
Query 631 AAAATGATCA-AT--T-GTAGCATCCCTCACCGTCCTTGGTCGTGGAACGGTGTATGCAT 686
| |||||| | || | ||| || |||||||||||||| || | |||||||| |||||
Sbjct 457 AGAATGAT-AGATACTAGTATTATTCCTCACCGTCCTTGCTC-T--AACGGTGTGTGCAT 512
Query 687 AAATGGTGTTGTGTATTACATTGCTAAAACGGGGGCGGGAATGTTGCAGCTGA-GCTTAA 745
| || ||||||||||||| |||||||||||||||||||||||||||| || | || |||
Sbjct 513 AGATAGTGTTGTGTATTATGTTGCTAAAACGGGGGCGGGAATGTTGCATCT-ATGCATAA 571
Query 746 TGAGATTTGATTTGAAGT-CTGACGATCT-GGATCTTTTTACTAGTTTACCTGAAGAGAT 803
|||||||||| |||| || |||| || | |||||||||||||||||| ||| |||||||
Sbjct 572 TGAGATTTGACTTGA-GTTCTGAA-ATATTGGATCTTTTTACTAGTTTGCCTCAAGAGAT 629
Query 804 T 804
|
Sbjct 630 T 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5