BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326030
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15802.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 494 2e-139
> AT5G15802.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35 Blast hits to 35
proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:5156349-5157545 REVERSE LENGTH=554
Length=554
Score = 494 bits (267), Expect = 2e-139
Identities = 289/300 (96%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1 ATGCAGAGTTTAACGTCGAACGAAGTAGCGGGTTTGGCAGTTGGAGCTCTGCTTCTCGGT 60
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 26 ATGCAGAGTTTAACGTCAAACGAAGTTGCGGGTTTGGCAGTTGGGGCTCTGCTTCTTGGT 85
Query 61 GCCACCATCGCTGCTCCTAAAGTTGATGCTTTCATCGCTGCTTCTCAGAGAAGATCTCTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 86 GCCACCATCGCTGCTCCTAAAGTTGATGCTTTTATCGCTGCTTCTCAGAGAAGATCTCTT 145
Query 121 GGAATGTGTCGAAAATGTGGAGATCTTAAGAATGTAGCATGTGGCCGTTGCAAAGGAACA 180
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 146 GGCATGTGTCGAAAATGTGGAGATCTTAAGAATGTAGCTTGTGGCCGTTGCAAAGGAACA 205
Query 181 GGAACAATCAAATCAGGGGGATTCTTTGGATTCAGTGACTCATCAAACACAAGATCAGTC 240
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 206 GGAACAATCAAATCAGGAGGATTCTTTGGTTTCAGTGACTCATCAAACACAAGATCAGTG 265
Query 241 GCTTGCGATAATTGCCAAGCCAAAGGTTGTTTCCCTTGCCCCGAATGCTCAAAATCTTGA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 266 GCTTGCGATAATTGCCAAGCCAAAGGTTGTTTCCCTTGCCCTGAATGCTCAAAATCTTGA 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5