BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326041
Length=3159
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15920.1 | Symbols: SMC5 | structural maintenance of chromos... 5033 0.0
> AT5G15920.1 | Symbols: SMC5 | structural maintenance of chromosomes
5 | chr5:5195683-5199559 FORWARD LENGTH=3279
Length=3279
Score = 5033 bits (2725), Expect = 0.0
Identities = 3021/3166 (95%), Gaps = 11/3166 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGAACGTCGTGCTAAGCGCCCTAAAATATCCAGAGGGGGAGATGACTTTTTGCCT 60
||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||
Sbjct 118 ATGTCTGAACGTCGTGCTAAGCGTCCTAAAATCTCCAGAGGAGAAGATGACTTTTTGCCT 177
Query 61 GGGAATATAATCGAAATCGAGCTTCATAACTTCATGACATTTAATCATTTGGTATGCAAA 120
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 178 GGGAATATAATCGAAATCGAGCTTCACAACTTCATGACATTCAATCACTTGGTATGCAAA 237
Query 121 CCTGGATCACGTTTGAACCTTGTAATTGGACCTAACGGATCAGGTAAGAGTTCTCTTGTG 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 CCTGGATCACGTTTGAACCTTGTTATTGGACCTAACGGATCAGGTAAGAGTTCTCTTGTC 297
Query 181 TGTGCCATTGCTCTTTGTCTTGGTGGTGAGCCTCAGCTTCTTGGGAGAGCTACCAGTGTT 240
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 TGTGCCATTGCACTCTGTCTTGGTGGTGAGCCTCAGCTTCTTGGGAGAGCTACTAGTGTT 357
Query 241 GGAGCTTATGTCAAGCGCGGGGAAGATTCTGGCTACGTTAAGATCTCTCTCAGAGGGAAC 300
||||| ||||| ||||| ||||||||||||||||| || ||||||||| | ||||| |||
Sbjct 358 GGAGCATATGTTAAGCGTGGGGAAGATTCTGGCTATGTCAAGATCTCTTTGAGAGGTAAC 417
Query 301 ACGAGGGAAGAAAATCTTACGATTTTCCGTAAGATCGATACACGTAACAAGTCTGAGTGG 360
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 ACCAGGGAAGAAAATCTTACGATTTTTCGTAAGATCGATACACGTAACAAGTCTGAGTGG 477
Query 361 ATGTTCAATGGAAGCACAGTTTGTAAGAAAGATATCGTTGAGATTATACAGAAATTTAAC 420
||||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||
Sbjct 478 ATGTTTAATGGAAGCACAGTTAGTAAGAAAGATATTGTGGAGATAATACAGAAATTCAAC 537
Query 421 ATTCAAGTTAACAATCTCACGCAGTTCCTGCCACAAGATAGGGTTTGCGAGTTTGCCAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATTCAAGTTAACAATCTCACGCAGTTCCTGCCACAAGATAGGGTTTGCGAGTTTGCCAAG 597
Query 481 TTAACGCCTGTGCAGCTCCTGGAGGAGACGGAAAAAGCTGTTGGTGATCCTCAGCTGCCA 540
||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 598 TTAACTCCTGTGCAACTCCTGGAGGAGACGGAAAAAGCTGTTGGGGATCCTCAACTGCCA 657
Query 541 GTCCATCATCGCGCGCTAGTTGACAAAAGCCGTGATCTGAAGCAGCTTGAGAGAGCCGTG 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 658 GTCCATCATCGCGCGCTAGTTGAGAAAAGCCGTGATCTGAAGCAGCTTGAGAGAGCTGTG 717
Query 601 GCGAAAAATGGAGAGACGCTGAATCAGCTTAAAGCTCTTGTTGATGAGCAAGAGAAGGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GCGAAAAATGGAGAGACGCTGAATCAGCTTAAAGCTCTTGTTGATGAGCAAGAGAAGGAC 777
Query 661 GTGGAGCGTGTTAGGCAGAGAGAGTTGTTTTTGACTAAGGTTGATTCCATGAAGAAGAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGGAGCGTGTTAGGCAGAGAGAGTTGTTTTTGACTAAGGTTGATTCCATGAAGAAGAAA 837
Query 721 TTGCCATGGCTAAAGTATGATATGAAAAAGGCTGAGTACATGGATGCTAAGAAGAGAATG 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TTGCCATGGCTAAAGTATGATATGAAAAAAGCTGAGTACATGGATGCTAAGAAGAGAATG 897
Query 781 AAGGAAGCCCAGAAAAAATTGGATGACGCTGCAGGGATTTTGAACAGCATGAAGGAACCT 840
||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 898 AAGGAAGCCGAGAAAAAATTGGATGAAGCTGCAAAGAATTTGAACAGCATGAAGGAACCT 957
Query 841 ATTGAAAAACAAAAGAAGGAGAAAGCAGAGACAGATTCAAAATGCAAAAAAGTTAAGAAT 900
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATAGAAAAGCAAAAGAAGGAGAAAGCAGAGACAGATTCAAAATGCAAAAAAGTTAAGAAT 1017
Query 901 CTCATGGATGCAAATGGAAGAAACCGTTGTAACTTGCTTGAGAAAGAAGATGAGGCAGAA 960
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1018 CTCATGGATGCAAATGGAAGAAACCGTTGTCACTTGCTCGAGAAAGAAGATGAGGCAGAC 1077
Query 961 GCACGTGTAGTGGCAACATACAAAGAACTGGAGGAATTGAAGAAACAAGAAGAACATCGC 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 GCACGTGTAGTGGCAACGTACAAAGAACTGGAGGAATTGAAGAAACAAGAAGAGCATCGT 1137
Query 1021 CAAGAAAGGATTCTGAAAGCTACTGAGGATCTGGTTGCTGCGGAACAAGAACTCAAAAAC 1080
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct 1138 CAAGAAAGGATTCTGAAAGCTACTGAGGATCTCGTTGCTGCGGAACGGGAACTCCAAAAC 1197
Query 1081 CTGCCTGTATACGAACGTCCTGTAGCCAAACTTGAAGAATTGAGCTATCAGATTACAGAG 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1198 CTGCCTGTATACGAACGTCCTGTAGCCAAACTTGAAGAATTGAGCTCTCAGGTTACAGAG 1257
Query 1141 CTGCATCAGAGCATAAACCGAAAGAAGAATCAGAAGGGGGATAATGAGAGGCTTTTGTCT 1200
|||||||| ||||| ||| |||||||||||||||||| ||| || |||| ||||||||||
Sbjct 1258 CTGCATCATAGCATTAACGGAAAGAAGAATCAGAAGGAGGACAACGAGAAGCTTTTGTCT 1317
Query 1201 CAGAAGAGACACACCCTGAGGCAATGCGCAGACAAGTTGAAGGACATGGAGAATGCAAAT 1260
||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 1318 CAGAAGAGATACACCCTGAGGCAATGCGTAGATAAGTTAAAGGACATGGAGAATGCAAAT 1377
Query 1261 AACAAACTCTTGAATGCGTTA-CGTAACTCTGGAGCTGATAGGATATTTGACGCATATCA 1319
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1378 AACAAACTCTTGAAAGCGTTAGC-TAACTCTGGAGCTGATAGGATATTTGACGCATATCA 1436
Query 1320 ATGGGTGCAACAGAATCGTCATGAGTTTAAAAGGGAAGTATATGGTCCTGTTTTGGTAGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1437 ATGGGTGCAACAGAATCGTCATGAGTTTAAAAGGGAAGTATATGGTCCTGTTTTGGTGGA 1496
Query 1380 GGTTAACGTTCCAAATCGAGAGAACGCTTGCTTTTTGGAGGGTCATGTTCCTTATTATGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1497 GGTTAACGTTCCAAATCGAGAGAACGCTTGCTTTTTGGAGGGTCATGTTTCTTTTTATAT 1556
Query 1440 CTGGAAGTCTTTTGTCACTCAGGATCCTGAGGACCGTGATTTGCTGGTTAGAAATCTAAA 1499
||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 1557 CTGGAAGTCTTTTATCACTCAGGATCCGGAGGACCGTGATTTGCTGGTTAAAAATTTAAA 1616
Query 1500 ACGATTTGATGTTCCTGTTCTTAACTATGTCAGCGCTGGCGGCAGTCAAAAGGCCCCCTT 1559
||||||||||||||||||||| |||||||| || | |||||| ||||||||| |||||
Sbjct 1617 ACGATTTGATGTTCCTGTTCTAAACTATGTGGGCAATAGCGGCAATCAAAAGGCTCCCTT 1676
Query 1560 TCATATTTCTGATCAGATGCGGTCTCTTGGGATCCATACTCGGCTTGATCAAATATTTGA 1619
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1677 TCATATTTCTGATCAGATGCGTTCTCTTGGGATCCATGCTCGGCTTGATCAAATATTTGA 1736
Query 1620 TGCTCCTGACGCCATCAAGGAGGTCTTAGCTTCCCAGTTTGGTCTGGACGACTCGTACAT 1679
||||||||| ||| |||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 1737 TGCTCCTGATGCCGTCAAGGAGGTTTTAAATTCCCAGTTTGGTCTGGAGGACTCGTACAT 1796
Query 1680 TGGATCGAAGATTACCGATCAGAGGGCTGAAGAAGTCTCTAAGTTGGGTATTACAGATTT 1739
|||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1797 TGGATCAAAGATTACCGATCAGAGGGCTGAAGAAGTCTATAAGTTGGGTATTAAAGATTT 1856
Query 1740 TTGGACACCAGACAATCACTACCGGTGGTCTTCCTCAAGGTATGGTGGTCATTCGTCTGC 1799
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1857 TTGGACCCCAGACAATCACTACCGGTGGTCTTCCTCAAGATATGGTGGTCATTCCTCTGC 1916
Query 1800 AAGTGTAGACTCTGTATATCAATCACGTCTTCTATTATGTGGGGTGGACGTTGGAGAGCT 1859
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AAGTGTAGATTCTGTATATCAATCACGTCTTCTATTATGTGGGGTGGACGTTGGAGAGCT 1976
Query 1860 TGAGAAACTGAGATCAAGAAAGGAGGAATTAGAAGACTCTATTTCATTCATGGAGGAAAC 1919
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1977 TGAGAAACTGAGATCAAGAAAGGAGGAATTAGAAGACTCTATTTTATTCATGGAGGAAAC 2036
Query 1920 TCACAAGAGTCTTCAAACAGAGCAAAGAC-TCTTGGAAGAAGAAGCAGCTAAACTTCATA 1978
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2037 TCACAAGAGTCTTCAAACAGAGCAAAGACGT-TTGGAAGAAGAAGCAGCTAAACTTCATA 2095
Query 1979 AAGAGAGGGAGGAGATTGTAAATGTTTCGCATCTGGAGAAGAAAAAACGCCGTGAGTTGG 2038
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2096 AAGAGAGGGAGGAGATTGTAAATGTTTCGTATCTGGAGAAGAAAAAACGCCGTGAGTTGG 2155
Query 2039 AATCCCGTTACCAGCAAAGGAAGACTAAGCTAGAATCTTTGGAGCAAGAGGAGGACATGG 2098
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 2156 AATCCCGTTACCAGCAAAGGAAGACAAAGCTGGAATCTTTAGAGCAAGAGGAGGACATGG 2215
Query 2099 ATGCTTCAGTTGCTAAGCTGATTGATCAGGCTTCCAGAGCTAACGCTGACCGCTATACAT 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 ATGCTTCAGTTGCTAAGCTGATTGATCAGGCTTCCAGAGCTAACGCTGACCGCTATACAT 2275
Query 2159 ATGCGATTAATCTCAAGAAATTGCTTGTGGAGGCTGTTGCTCATAAGTGGAGTTACGCCG 2218
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2276 ATGCAATCAATCTCAAGAAATTACTTGTGGAGGCTGTTGCTCATAAGTGGAGTTACGCCG 2335
Query 2219 AGAAGCATATGGCTTCTATTGAATTGGAAAGAAAGATCAGAGAGTCGGAATTCAATATCA 2278
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 2336 AGAAGCATATGGCTTCTATAGAATTGGAAAGAAAGATCAGAGAGTCGGAAATCAATATCA 2395
Query 2279 AACAATATGAGAAAACGGCACAACAGCTATCTCTCGCCGTTGAGTATTGTAAGAAAGAGG 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 AACAATATGAGAAAACGGCACAACAGCTATCTCTCGCCGTTGAGTATTGTAAGAAAGAGG 2455
Query 2339 TAGAAGGAAAGCAGCAGCGGCTAGCCTCTGCCAAGAGGGATGCAGAATCTGTTGCAATCA 2398
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2456 TAGAAGGAAAGCAGCAGCGGCTAGCAACTGCCAAGAGGGATGCAGAATCTGTTGCAACCA 2515
Query 2399 TCACACCTGAACTTAAAAAGGAGTTTATGGAGATGCCTACCACAGTCGAAGAATTGGAAG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 TCACACCTGAACTTAAAAAGGAGTTTATGGAGATGCCTACCACAGTCGAAGAATTGGAAG 2575
Query 2459 CGGCTATACAAGACAATCTGTCTCAAGCCAATTCAATCCTTTTCGTAAACGAGAACATTC 2518
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2576 CGGCTATACAAGACAATCTGTCTCAAGCCAATTCGATCCTTTTCATAAACGAGAACATTC 2635
Query 2519 TGCAAGAGTATGAACATCGCCAAAGTCAGATATATACCATTTCGACGAAGCTCGAAGCTG 2578
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2636 TCCAAGAGTATGAACATCGCCAAAGTCAGATATATACCATTTCTACGAAGCTCGAAACTG 2695
Query 2579 ATAAAATAGATCTGAGCATATGCATGAAAGAAATCGATTCGCTAAAGGAGAAATGGCTTC 2638
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2696 ATAAAAGAGATCTGAGCATATGCATGAAAGAAATCGATTCGCTAAAGGAGAAATGGCTTC 2755
Query 2639 CAACATTGAGACAGCTTGTTGGTCAGATAAATGAAACATTCAGCCACAACTTCCAAGAAA 2698
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2756 CAACGTTGAGACAGCTTGTTGGTCAGATAAATGAAACATTCAGCCACAACTTCCAAGAAA 2815
Query 2699 TGGCTGTTGCAGGAGAAGTTTCATTGGATGAGCGTGACACTGACTTTGATCAATACGGAA 2758
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2816 TGGCTGTTGCAGGAGAAGTTTCATTGGATGAACGTGACACTGACTTTGATCAATACGGAA 2875
Query 2759 TACATATCAAAGTGAAATTCAGGGAATCTGGGCAACTTCAGGTTCTAAGCTCTCACCACC 2818
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2876 TACATATCAAAGTGAAATTCAGAGAATCTGGGCAACTTCAGGTTCTAAGCTCTCACCACC 2935
Query 2819 AATCCGGAGGAGAGCGTTCTGTCTCAACTATCCTTTACCTCGTCTCTCTTCAAGATCTGA 2878
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936 AATCTGGAGGAGAGCGTTCTGTCTCAACTATCCTTTACCTCGTCTCTCTTCAAGATCTGA 2995
Query 2879 CAAACTGTCCTTTCAGGGTTGTTGATGAGATTAATCAAGGTATGGATCCCATAAACGAAA 2938
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2996 CAAACTGTCCTTTCAGGGTTGTTGATGAGATTAATCAAGGTATGGATCCCATAAATGAAA 3055
Query 2939 GGAAGATGTTTCAACAATTGGTTAGAGCTGCTAGTCAACCAAACACACCACAGTGCTTCT 2998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3056 GGAAGATGTTTCAACAATTGGTTAGAGCTGCTAGTCAACCAAACACACCACAGTGCTTCT 3115
Query 2999 TACTGACACCAAAGCTCCTGCCGGATCTAGAATACAGTGAAGCCTGTAGCATTCTGAACA 3058
||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 3116 TACTGACCCCAAAACTCTTACCGGAGCTAGAATACAGTGAAGCCTGTAGCATTCTGAACA 3175
Query 3059 TCATGAACGGTCCTTGGATCGAGCAGCCTTCAAAAGTATGGAGCCTT-GGTGATAGTTGG 3117
||||||||||||||| |||| | ||||||||||||| |||||| || ||||||||||||
Sbjct 3176 TCATGAACGGTCCTTATATCGCGGAGCCTTCAAAAGTTTGGAGC-TTAGGTGATAGTTGG 3234
Query 3118 GGCAATCTCA-TGAGACG-A-A-CCGAAGCTAGTCAATGTTCTTAA 3159
|||| ||||| | ||||| | | ||||||||||||||||||| |||
Sbjct 3235 GGCAGTCTCAAT-AGACGGAGAACCGAAGCTAGTCAATGTTCCTAA 3279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157122865476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5