BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326056

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16090.1 | Symbols:  | INVOLVED IN: nucleotide-excision repa...   172    2e-42


> AT5G16090.1 | Symbols:  | INVOLVED IN: nucleotide-excision repair; 
LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation 
elongation factor EF1B, N-terminal, 
eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation 
elongation factor EF1B, N-terminal (InterPro:IPR000449), 
UV excision repair protein Rad23 (InterPro:IPR004806), 
Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), 
UBA-like (InterPro:IPR009060); BEST Arabidopsis 
thaliana protein match is: Rad23 UV excision repair protein 
family (TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins 
in 240 species: Archae - 0; Bacteria - 0; Metazoa - 634; 
Fungi - 179; Plants - 321; Viruses - 27; Other Eukaryotes 
- 150 (source: NCBI BLink). | chr5:5255797-5257230 REVERSE 
LENGTH=516
Length=516

 Score =  172 bits (93),  Expect = 2e-42
 Identities = 154/180 (86%), Gaps = 17/180 (9%)
 Strand=Plus/Plus

Query  1    ATGAAGATAATTGTAAAAACTTTGAAGGGGACTCGCTTCGAGATCGAAGTTAAACCCAAC  60
            |||||||| ||||| ||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct  1    ATGAAGATCATTGTCAAAACATTGAAGGGGATTCGCTTCGAGATCGAAGTAAAACCCAAC  60

Query  61   GA-----TT-C---------GAAGAACATAGAGACTGTTCTGGGAGCTAGTGAATATCCT  105
            ||     || |         ||||||||||||||||||  ||||||||||||||||||||
Sbjct  61   GATTCGGTTGCTGAAGTGAAGAAGAACATAGAGACTGTGATGGGAGCTAGTGAATATCCT  120

Query  106  GCTGCACAACAAATTCTTATTCATAAA-GGGAAAAAGCTTAGAGATGAAGCAACAATGGA  164
            |||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct  121  GCTGCACAACAAATACTTATTCATAAAAGGGAAAA-GCTTAGAGATGAAACAACAATGGA  179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5