BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326057
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16100.1 | Symbols: | unknown protein; Has 30201 Blast hits... 913 0.0
> AT5G16100.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5258551-5259719
REVERSE LENGTH=1074
Length=1074
Score = 913 bits (494), Expect = 0.0
Identities = 782/921 (85%), Gaps = 19/921 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGGCGATGATCCTAAGCCATCCGCTCCAAAAGACAACGGGTATGAAGATCTCTAC 60
|||||||| |||||||| || |||||||||| |||||| | ||||||||||||| ||||
Sbjct 1 ATGGCGGGTGATGATCCAAAATCATCCGCTCCTAAAGACGATGGGTATGAAGATCCCTAC 60
Query 61 ---AATGACCCATTTGATGGGTTCGGGGGATTTACGGACGAAGATCTAATAAATGTTATG 117
||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 61 ATTAATGATCCATTTGATGGGTTCGGGCCCTTTACGGACGAAGATCTAATTAATGTAATG 120
Query 118 TCAGACTTGAATCCTAATCTT-ATGGATATGTCTTTCACGGAACACACGTCTCC-TCCTG 175
| ||| | || || || ||| ||||| ||||||||||||||||||||| |||| | |||
Sbjct 121 GCCGACAT-AAACCCAAACTTAATGGACATGTCTTTCACGGAACACACGCCTCCGT-CTG 178
Query 176 TGTTTCCTACCTTACCATTAGATGTGGACGACACTCAGTTACTTCATGAATTAGATCTCT 235
|||| ||||| ||||||| || |||||||| ||||| || |||||||| | ||||| |
Sbjct 179 TGTTACCTACATTACCATCGGACGTGGACGAAACTCATTTGTTTCATGAACTCGATCTTT 238
Query 236 CGATCACCAACTACGACAT-CAAGGATGAGTTTGATAGTCTGTCTTGCGTGGATGATGGT 294
|||||| ||||||||| | ||| |||||||| || | ||||||| ||| || || |||
Sbjct 239 CGATCAGTAACTACGAC-TCCAAAGATGAGTTCGAGACACTGTCTTTCGTTGAAGACGGT 297
Query 295 TTTACCATCTCGTTGGACATGTAT-GACCAACCTAATGATGATC-TGAACGACAACAATG 352
|| |||||| | ||||| |||| | || |||||||||||||| | | |||||||||||||
Sbjct 298 TTCACCATCCCCTTGGATATGT-TCGAACAACCTAATGATGAACAT-AACGACAACAATG 355
Query 353 ATGTCCCAGGAGAGATTGGTAATGATAATGGTAAAAGCATTGTTGATGAAAGTACAAGAC 412
|||||||||||||||||||||||||||||||||||| | |||||| ||| ||||| |||
Sbjct 356 ATGTCCCAGGAGAGATTGGTAATGATAATGGTAAAAACGTTGTTGGTGATAGTACTCGAC 415
Query 413 TTGAAGTGAGCACTCGAGTTTTCGGTGGTGCTAATGGTCCAGACTTTGAAATTGGTGGTT 472
||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 416 TTGAATTGAGCACTAGAGTTTTTGGTGGTGCTAATGGTCTAGACTTTGAAATTGGTGGTT 475
Query 473 CATCAACAATACCTGTCCCGGTTACACCGACAATCTCTGATGGAGTTTACGTATGCGGTT 532
|| ||||||| ||||||||||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 476 CAGCAACAATGCCTGTCCCGGTTACAACGACAATCTCTGATGGAGTTCACGCATGCAATT 535
Query 533 GTTGTAAAATGCTTCGAGAATTAGTCCACCTCAAGAAAGAGGTGGAACGGAATACTCTTA 592
|||| | | ||||||||||||||||||| |||||| ||| || |||| ||| || |||
Sbjct 536 GTTGCAGATTGCTTCGAGAATTAGTCCATCTCAAGGAAGGGGAGGAAAGGAGTAAGCTTG 595
Query 593 ACATCTTTGGAGGGATTGGTTTCTTTTGCCATGCGGTTCTTCT-GACTGAACTCTTGTTT 651
|||||| |||||| ||||||||| |||||||||| |||| || || | |||| ||| |
Sbjct 596 ACATCTATGGAGGAATTGGTTTCATTTGCCATGCTATTCT-CTTGATTCAACTGTTGGCT 654
Query 652 CCTGATTCTATGGAATGTCAACCTCAAACAATTCATCTAAAAGAATT-AACGATGGAGGA 710
|||||||||||| || ||||||||| || | ||||||| | | ||| ||||||||||||
Sbjct 655 CCTGATTCTATGCAACGTCAACCTCTAATATTTCATCTGCA-GCATTTAACGATGGAGGA 713
Query 711 AGTTAAAAAGTTCATAGAAGATTATTGCTCCCATAGAGTAGCAAGTGGGTTATCACTTGT 770
||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||| |
Sbjct 714 AGTTAAAAAGTTCATAGAAGATTATTGCTACCAGAGAGTAGCAAATGGTTTATCACTTTT 773
Query 771 GCGAGACACTAATGCTGCTTTCTATCAAGCAATGAGTGCCAACTTCATCTCTAACCAGTC 830
|| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |
Sbjct 774 GCAAGACACTAATGCTGCTTTTTATCAAGCAATGAGTGCCAACTCCATCTTTAACCAGCC 833
Query 831 AACGTCTATGTTGACAATACCATCACCCACTGATGTTCCAATGTCTTTGGTTTCGCCTGA 890
| | ||||||||||| |||||||| ||||||||||||| |||||||| |||||||| |
Sbjct 834 ACCACCTATGTTGACATTACCATCAAGCACTGATGTTCCACTGTCTTTGCTTTCGCCT-A 892
Query 891 A-GAAGCTCGCCCTGTTCCAC 910
| |||| || | ||||||||
Sbjct 893 ACGAAGATCACGATGTTCCAC 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5