BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326063
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16170.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1908 0.0
> AT5G16170.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:5277867-5279818
FORWARD LENGTH=1362
Length=1362
Score = 1908 bits (1033), Expect = 0.0
Identities = 1172/1237 (95%), Gaps = 17/1237 (1%)
Strand=Plus/Plus
Query 1 ATGGGCATTA-TAGATCATAAGAGCAAGAAAGAAGAAGAACAGTACCCAATGATCTCAAA 59
||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 ATGAGCATTAGT-GATCATAAGAGCAAGAAAGAAGAAGAACAGTACCCAATGATCACAAA 118
Query 60 GCCCTTGAGATTTATTCTCTTACAAAAGGGAAGTTATGTCTTAAGCTCACTCTTCTTTGT 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 GCCCTTGAGATTGATTCTCTTACAAAAGGGAAGTTATGTCTTAAGCTCACTCTTTTTTGT 178
Query 120 ATTCGGTTTCTCGGTCGGTCTCTTCCTTTGTCTGCAACTAAAAGCCGTACACATGTCTAC 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATTCGGTTTCTCGGTTGGTCTCTTCCTTTGTCTGCAACTAAAAGCCGTACACATGTCTAC 238
Query 180 GACGACGACACAACGACAACCCTTATGGTCTACATTACTATTCAACCATA----CCACA- 234
||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||
Sbjct 239 GACGACGACACAACGACAACCCTTATGGTCTACCTTATTATTCAACCACACGGTCCACAC 298
Query 235 -AC---GATGGACATCAAACAAGAGTTGCAACTAAAAACACTTCAACACAACATGAGTGA 290
|| |||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 299 CACAGAGATGGATATCAAACAAGAGTTGCAACTACAAGTACTTCAACACAACATGAGTGA 358
Query 291 TCAAGAACTCTTCACCAAGGTCTCGTCATTATCATCACCAACATCAT-C--ATCG---TC 344
|||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||
Sbjct 359 TCAAGAACTCTTCACCAAGGCCTCGTCATTATCATCACCAACATCATCCTTATCGTCATC 418
Query 345 ATCATGGTTAGGGAGGAGACATAATAATGATGGGAAGATGGTTGTGAAGGTGGCTTTCAT 404
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 ATCATGGTTAGGGAGGAGACATAATAATGATGGGAAGATGGCTGTGAAGGTGGCTTTCAT 478
Query 405 GTTCATGACAGGTGGCAGACTCCCATTGGCTGGCTTGTGGGAGAAGTTCTTTGAAGGACA 464
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 GTTCATGACAGGTGGAAGACTCCCATTGGCTGGCTTGTGGGAAAAGTTCTTTGAAGGACA 538
Query 465 TGAAGGGTTTTATTCCATATATGTCCATACTAATCCATCCTTTCAAGATTCTTTCCCAGA 524
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 539 TGAAGGGTTTTATTCCATATATGTTCATACTAATCCATCTTTTCAAGATTCTTTCCCCGA 598
Query 525 AACTTCCATCTTCTACTCAAGAAGAATCCCAAGCCAGCCGGTGTATTGGGGAACATCATC 584
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 AACTTCCGTCTTCTATTCAAGAAGAATCCCAAGTCAGCCGGTGTATTGGGGAACATCATC 658
Query 585 AATGGTAGACGCAGAGAAAAGACTATTAGCCAACGCACTTCTAGACGAATCGAACCAAAG 644
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 659 AATGGTAGACGCAGAGAAAAGACTATTAGCCAACGCACTTCTCGACGAATCCAACCAAAG 718
Query 645 ATTCGTCCTCCTGTCCGATTCTTGCATTCCACTCTACAATTTCACAACAATCTACGATTA 704
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 719 ATTCGTCCTCTTGTCCGATTCTTGCATCCCACTCTACAATTTCACAACCATCTACGATTA 778
Query 705 CTTAACCGGCACCAATCTCAGTTTTATTGGTTCATTCGACGACCCAAGAAAATCCGGTAG 764
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 779 CTTAACCGGCACCAATCTCAGCTTCATTGGCTCATTCGACGACCCAAGAAAATCCGGTAG 838
Query 765 AGGCCGTTACAATCACAAAATGTATCCACAAATCAACATCACACATTGGAGAAAAGGATC 824
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 AGGCCGTTACAACCACACAATGTATCCACACATCAACATCACACATTGGAGAAAAGGATC 898
Query 825 ACAATGGTTTGAAACAACTAGAGAACTTGCTCTTCATATTATCGCAGACACGGTTTACTA 884
||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 899 ACAGTGGTTTGAAACAACTCGAGAACTTGCTCTTCATATAATCGAAGACACGGTTTACTA 958
Query 885 CAGAGTATTCGATGAACATTGTAAACCGCCTTGTTACATGGACGAGCATTATATCCCAAC 944
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAAAATATTCGATCAACATTGTAAACCGCCTTGTTACATGGACGAGCATTATATCCCAAC 1018
Query 945 TCTTGTTCACATGTTGCATGGGGAGATGAGCGCTAACCGGACCTTGACGTGGGTTGATTG 1004
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCTCGTTCACATGTTGCATGGAGAGATGAGCGCTAACCGGACCTTGACGTGGGTTGATTG 1078
Query 1005 GTCCAAAGCCGGTCCACATCCTGGCCGGTTTATTTGGCCTGATATAACCGATGAGTTTCT 1064
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTCCAAAGCTGGTCCACATCCTGGCCGGTTTATTTGGCCTGATATAACCGATGAGTTTCT 1138
Query 1065 TAACCGAATCCGGTTTAAGGAGGAGTGTGTCTATTATGGCCGTGGTGGAGAGAATGTTAC 1124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 TAACCGAATCCGGTTTAAGGAGGAGTGTGTCTATTTTGGCCGTGGTGGAGAGAATGTTAC 1198
Query 1125 AACTTCCAAGTGTTTTTTATTTGCGAGGAAATTTACAGCCGAAACATTAGAGCCTTTGTT 1184
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1199 AACTTCCAAGTGTTTTTTATTTGCGAGGAAATTTACAGCCGAAACTTTAGAACCATTGTT 1258
Query 1185 AAGAATTTCGCCAATAGTTCTTGGATTTGGTCCATAG 1221
|||||||||||||||||||||||| ||||||||||||
Sbjct 1259 AAGAATTTCGCCAATAGTTCTTGGTTTTGGTCCATAG 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5