BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326092

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16490.1 | Symbols: RIC4 | ROP-interactive CRIB motif-contai...   721    0.0  


> AT5G16490.1 | Symbols: RIC4 | ROP-interactive CRIB motif-containing 
protein 4 | chr5:5384305-5385213 REVERSE LENGTH=633
Length=633

 Score =  721 bits (390),  Expect = 0.0
 Identities = 438/462 (95%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAGATAGAATGGAGAGACTTGTGGTGCTTCCTTTCTCCGTCGGATGTATCTCCGAC  60
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  9    ATGAGAGATAGAATGGAGAGACTTGTGGTGCTTCCTTTCTCCATCGGATGTATCTCCGTC  68

Query  61   TCAAGTGTTGCCGTTTTATCTCCTCTCTCAAAGCCTCATCATCATCACTCTCGTCAAGAG  120
            ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct  69   TCAAGTGTTGCCGTTTTGTCTCCTCTCTCTAAGCCTCATCATCATCACTCTCGTCAAGTG  128

Query  121  ATTCGTGATCAAGAGGAGGAAGATAACATGAAGAATGTATTCAAGTTCCTTGCGGTTTCT  180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  129  ATTCGTGAACAAGAGGAGGAAGATAACATGAAGAATGTATTCAAGTTCCTTGCGGTTTCT  188

Query  181  AAGCCCGAGATTTCTACCGGTATTAACCGGCTTTTCAAGAGCTTCAAGACCATTTCTCAA  240
            || || |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct  189  AAACCGGAGATTTCTATCGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAA  248

Query  241  CTCTTTGCTGACAAAGAAGAAGAGAAGGAAGAAGTCGAGACATCAGGAATGGAGATAGGA  300
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  249  CTCTTTGCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAGGA  308

Query  301  GTTCCCACAAACGTAAAACATGTATCGCACATCGGATGGGAAAGCGGTTTAACCGCGGCT  360
            ||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct  309  GTTCCAACGAACGTAAAACATGTATCGCACATCGGTTGGGAAAGCGGTCTAACCGCGGCT  368

Query  361  ACAGGTCCAGGTAAAGGATGGGAAGATCTCATACCACCGGAGTTGCTTGCAGCCGCTTCT  420
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  369  ACAGGTCCTGGTAAAGGATGGGAAGATCTCATACCGCCGGAGTTGCTTGCAGCCGCTGCT  428

Query  421  ACaaaaaaaGATGTTAATCCTCATCTTCACCCAACTTTATAA  462
             ||||||||||  |||| ||||||||||| ||||||||||||
Sbjct  429  TCAAAAAAAGAAATTAACCCTCATCTTCATCCAACTTTATAA  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5