BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326097
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16530.1 | Symbols: PIN5 | Auxin efflux carrier family prote... 1664 0.0
> AT5G16530.1 | Symbols: PIN5 | Auxin efflux carrier family protein
| chr5:5400735-5402626 FORWARD LENGTH=1056
Length=1056
Score = 1664 bits (901), Expect = 0.0
Identities = 1008/1060 (95%), Gaps = 5/1060 (0%)
Strand=Plus/Plus
Query 1 ATGATAAGTTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTATATGTAGCC 60
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGATAAATTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTCTATGTAGCC 60
Query 61 TTAATCTTAGGCTATGGTTCTGTGAAATGGTGGAACATCTTCACTCGTGATCAATGCGAT 120
||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 61 TTAATCTTAGGCTATGGCTCTGTGAAATGGTGGCACATCTTCACGCGTGATCAATGTGAT 120
Query 121 GCTATAAACCGGCTCGTTTGCTATTTCACCCTTCCGCTCTTCACAATCGAGTTCACGGCC 180
||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 121 GCTATAAACCGTCTCGTTTGCTATTTCACCCTGCCGCTCTTCACCATTGAGTTCACGGCC 180
Query 181 CATGTCGACCCATTCAACATGAATTACCGGTTCATCGCTGCCGATGTCCTCTCTAAGGTC 240
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CATGTCGACCCGTTCAACATGAATTACCGGTTCATCGCGGCCGATGTCCTCTCTAAGGTC 240
Query 241 ATCATAGTCACGGTCTTAGCGTTTTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCATAGTCACGGTCTTAGCGTTGTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGG 300
Query 301 TCCATTACTAGTTTCTCTCTATGCACTCTTACCAACTCTCTGGTCGTTGGTGTGCCATTG 360
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 301 TCCATTACTAGTTTCTCTCTATGCACTCTTACTAACTCTCTTGTCGTTGGTGTGCCATTG 360
Query 361 GCTAAGGCAATGTACGGACAACAGGCTGTCGATCTCGTGGTTCAATCCTCGGTATTTCAA 420
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 GCTAAGGCAATGTACGGACAACAGGCTGTTGATCTGGTGGTTCAATCCTCGGTATTTCAA 420
Query 421 GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGCTTAGAAAAGCCGGATCTAGT 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 421 GCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGTTTAGAAAAGCCGGATTTAGT 480
Query 481 AGTAATTATAGCAGCGACGTA-AAGGTAGACAGCATCAATATCGAAAACGGAAAAAGAGA 539
|||||| ||| |||||||||| || ||||||| |||||||||||||| |||||||||||
Sbjct 481 AGTAATAATATCAGCGACGTACAA-GTAGACAACATCAATATCGAAAGTGGAAAAAGAGA 539
Query 540 AATTGTGGTTGTGGGAGAGGAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA 599
|| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACTGTGGTTGT-GG-GA-GAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAA 596
Query 600 GCTTGCAACAAATCCGAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTCTTATTTC 659
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 597 GCTTGCAACGAATCCAAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTTTTATTTC 656
Query 660 TAACAGATGGCATCTGGAGATGCCGGGCATATTAGAGGGATCGATTCTTATAATGTCAAA 719
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 TAACAGATGGCATCTGGAGCTGCCGGGCATATTAGAGGGTTCGATTCTTATAATGTCAAA 716
Query 720 AGCAGGAACAGGAACCGCCATGTTCAATATGGGGATATTCATGGCACTTCAAGAGAAGTT 779
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 717 AGCAGGAACAGGAACGGCCATGTTCAATATGGGAATATTCATGGCACTTCAAGAAAAGTT 776
Query 780 GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTCTTGAAGTTTATTGCCGGACC 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 GATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTATTGAAGTTTATTGCCGGACC 836
Query 840 TGCCGCCATGGCCATCGGTTCTATCGCCCTTGGCCTCCACGGCAATGTCCTCCGCGTTGC 899
|| |||||||||||||| ||||| | ||||||||||||||| ||||||||||||| ||
Sbjct 837 GGCGGCCATGGCCATCGGCTCTATTGTCCTTGGCCTCCACGGTGATGTCCTCCGCGTAGC 896
Query 900 CATCATTCAGGCTGCTTTGCCACAATCGATCACTTCGTTCATTTTTGCTAAGGAATATGG 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 CATCATTCAGGCTGCTTTGCCACAATCGATTACTTCGTTCATTTTTGCTAAGGAATATGG 956
Query 960 ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTCGGGATGTTGGTTTCTCTGCCTGT 1019
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 957 ATTACATGCAGATGTTCTAAGCACAGCGGTGATATTTGGGATGTTGGTCTCTCTACCTGT 1016
Query 1020 GCTCGTCGCTTACTACGCAGCTCTGGAGTTTATTCATTGA 1059
||||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 GCTCGTCGCCTACTACGCAGCTCTGGAGTTTATTCATTGA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5