BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326112
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16740.1 | Symbols: | Transmembrane amino acid transporter ... 1886 0.0
> AT5G16740.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr5:5501044-5502856 REVERSE LENGTH=1281
Length=1281
Score = 1886 bits (1021), Expect = 0.0
Identities = 1198/1284 (93%), Gaps = 9/1284 (1%)
Strand=Plus/Plus
Query 1 ATGATTTGCGTTGCATGTGTTGAGGAAAATAAAGGGTGTGAATGTGAGCACGAAAAACCG 60
||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTTTGTGTTGCATGTGTTGAGGAAAATAAAGGGTGTGAATGTGAGCATGAAAAACCG 60
Query 61 GTCAAAGAGTTGGCGTTGGA---GGCATCTGAAAATAGTTCATTTCTTCACTCTGTTATC 117
|| | |||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTTAGAGAGTTGGTGTTGGAGGCGGCGTCTGAAAATAGTTCATTTCTTCACTCTGTTATC 120
Query 118 AATATGGTTGGTATGCTCATTGGACTAGGCCAACTATCTATGCCATACGCCGTCGAAAGC 177
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 AACATGGTTGGTATGCTCATTGGACTTGGCCAACTATCTATGCCATACGCCGTTGAAAGC 180
Query 178 GGCGGTTGGATGTCAATCTTCCTCCTCATATTC-TTCGGAATCCTCACCACTTACTCTTC 236
|||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||
Sbjct 181 GGCGGTTGGATGTCAATCTTCCTCCTCATA-TCATTCGGAATCCTCACTACCTACACTTC 239
Query 237 CCACATCCTCGGAAACTGTATCCGCCGCAACCCCAAATCGAAATCCTACTCCGATATCGG 296
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 CCACATCCTCGGAAAATGTATCCGCCGCAACCCCAAATCAAAATCCTACTCCGATATCGG 299
Query 297 CTACTCTGCCTTCGGCCGCCACGGCCGCCTCATCACCTCCCTCTTCATCTACCTCGAAAT 356
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 300 CTACTCTGCCTTCGGCCGCCACGGCCGCCTCATCGTCTGCCTCTTCATCTACCTCGAAAT 359
Query 357 CTTCATGGCCTTAGTCTCTTATACCATCTCCCTCCACGACAACATCTCCGCCGCTTTTCC 416
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CTTCATGGCCTTAGTGTCTTACACCATCTCCCTCCACGACAACATCTCCGCTGCTTTTCC 419
Query 417 CGCCACTTTTTCCAACCACGGCCATTTTCCGGCGGCTAAGCTGACGGCGGTGGCGGTGGC 476
|||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 420 CGCCACTTTTTCTAACCACGGCCATTTTCCCGCGGCCAAGCTGACGGCTGTGGCGGTGGC 479
Query 477 TATCGCCTTGCCAAGCCTATGGATTAGGGATTTGTCTTCGATCTCGTTTCTATCTTCCGG 536
|||||||||||| || | ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 480 TATCGCCTTGCCGAGTTTGTGGATAAGAGATTTGTCTTCGATCTCGTTTCTTTCTTCCGG 539
Query 537 TGGGATTCTTATGTCGGCCATTATATTTGGGTCGGTGGTTTACACGGCCGTCTTTGGAGG 596
||| |||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||
Sbjct 540 TGGTATTCTTATGTCGGCTATAATATTTGGGTCAGTGGTTTACACGGCCATCTTTGGAGG 599
Query 597 CGTTATTGATGATGGAAGGATTCCGGTGCTCCGATTAG-GTAATATTCCGACGGTTTCGG 655
||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 600 CGTTATTGATGATGGAAAGATTCCGGTGCTCCGGTTAGAG-AATATTCCGACGGTTTCGG 658
Query 656 GAATCTATCTCTTTAGTTTCGGTGGACACATCGTATTTCCTAATCTATACACTTCAATGA 715
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 659 GAATCTATCTCTTTAGCTTCGGTGGACACATCGTATTTCCTAATCTCTATACTTCCATGA 718
Query 716 AAGATCCCTCCAAATTCACAAAGGTATCAATCGTAAGTTTTGCTACGGTGACGGCGTTAT 775
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 719 AAGATCCCTCCAAATTCACAAAGGTATCAATAGTAAGTTTTGCTACGGTAACGGCGTTAT 778
Query 776 ACACCGCACTAGCCATGACAGGAGCGAAGATGTTCGGACCAAGTGTAAATTCCCAAATTA 835
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACGGAGCACTAGCCATCACAGGAGCGAAGATGTTCGGACCAAGTGTAAATTCCCAAATTA 838
Query 836 CCCTCAGTCTTCCAAAACATTTACTAGTTACCAAGATCGCTCTTTGGGCCACTGTACTAA 895
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 CCCTCAGTCTTCCGAAACATTTAGTAGTTACCAAGATCGCTCTTTGGGCCACTGTACTAA 898
Query 896 CCCCAATGACCAAATATGCCTTAGAGTTCGCTCCTTTAGCCATTCAGCTCGAACGTAGTC 955
|||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 899 CCCCAATGACCAAATACGCCTTAGAGTTCGCTCCTTTGGCCATCCAGCTGGAACGTAGCC 958
Query 956 TTCCTTCGACCATGAGTGATCGCACCAAGCTTTTGGCTCGTGGTCTTACGGGATCATCTC 1015
||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||| |||
Sbjct 959 TTCCTTCGACCATGACTGATCGCACCAAGCTTGTGGCTCGCGGTCTTATGGGATCAGCTC 1018
Query 1016 TGTTGCTGGTCATTCTCGCATTGGCTTTAACTGTCCCTTACTTCGGTTATGTCTTAAGCC 1075
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1019 TGTTGCTGGTCATTCTCGCATTGGCTTTAACCGTCCCTTACTTCGGTTATGTCTTGAGCC 1078
Query 1076 TCTCGGGCTCGTTGGTTAGCGTCACGATCGCTGTGACATTACCGGCTGCTTTCTACTTGA 1135
|| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1079 TCACGGGCTCTTTGGTTAGCGTCACAATCGCTGTGACATTACCGTCTGCTTTCTACTTGA 1138
Query 1136 AGATTTGCTGGGACGGGATGTCGAAATTCACAAGAGTTGCCAATCTCGGGTTT-GTTGTT 1194
|||||||||||||||||||| |||| |||||| ||| |||||||| || ||| ||||||
Sbjct 1139 AGATTTGCTGGGACGGGATGACGAAGTTCACACGAGCCGCCAATCTTGG-TTTCGTTGTT 1197
Query 1195 CTCGGGTGTGTTCTTGGTGTTTTGGGATCGTTTGAATCATCAAAGTTGCTTGTGAAAGAA 1254
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1198 CTCGGGTGTGTTCTTGGAGTTTTGGGATCTTTTGAATCATCAAAGTTGCTTGTCAAAGAA 1257
Query 1255 CTCATTCGCGTTCATGGAGGTTGA 1278
||| ||||||||||||||||||||
Sbjct 1258 CTCGTTCGCGTTCATGGAGGTTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5