BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326143
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17110.1 | Symbols: | Cystatin/monellin superfamily protein... 791 0.0
AT5G17100.1 | Symbols: | Cystatin/monellin superfamily protein... 630 4e-180
> AT5G17110.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:5626563-5627474 REVERSE LENGTH=627
Length=627
Score = 791 bits (428), Expect = 0.0
Identities = 571/636 (90%), Gaps = 26/636 (4%)
Strand=Plus/Plus
Query 1 ATGACATCGGCCAACAACGAATTAACTTG-TTCCACGACGGGTACATCGGCCAAGGAGGA 59
||||||||| ||||||| |||||||| || ||||| || |||||||||| || | ||||
Sbjct 1 ATGACATCGACCAACAATGAATTAAC-TGTTTCCATGATGGGTACATCGACC-A--AGGA 56
Query 60 GGAGGTTGTCTCTAAAGTCGACAAGGAAGACGACGA-A--AGCA--G-CAGCGATA--G- 110
|||||||||||||||||||||| ||||||||||||| | |||| | |||||||| |
Sbjct 57 GGAGGTTGTCTCTAAAGTCGACGAGGAAGACGACGATAGTAGCAGCGACAGCGATATGGA 116
Query 111 CGACGGCAGCGACAGCGAGTGGGCTGGGTATAACTG-GTTACCGGAAACTGAACCAGAGT 169
|||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 117 TTACGGTAGCGACAGCGAGTGGGCTGGGTATAAC-GTGTTAGCGGAAACTGAACCAGAGT 175
Query 170 GGGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGT-AAGATG 228
|||||||||| |||||||| |||||||||||||||||||| |||||||||||| || |||
Sbjct 176 GGGACGTCGACAGCTTTGACGGTCACGAGTTTAAAATCAATCCCAGGGTTCGTCAA-ATG 234
Query 229 TATTC-AAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 TA-CCGCAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTCAAGGCTTTCGAGAA 293
Query 288 TAAGGGTTTCCTTCCCGATCATCTGAACGGAATCTACAATGTTTATCTAGACGAAAAAAT 347
||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 294 TAAGGGTTTTCTTTCTGATCATCTGAATGGAATCTATGATGTTTATCTAGACGAAAAAAT 353
Query 348 GGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCCAATGTGTGTGTTAAGAA 407
|||||||||||||| |||| |||||||||||| | ||||||| |||||||||||||||||
Sbjct 354 GGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAA 413
Query 408 ACACAACGAGACCAAGGGAACGACTTTAGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 467
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 414 ACACAACGAGACCAAGGGAAATACTTTGGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 473
Query 468 GGGAGCAGCTACATGGAGGTTTTACATCACTTTTATGGCTC-AGGAGTATCGTGATGGGC 526
||||||||||||||||||||| ||||||||||||||||||| || ||| || ||||||||
Sbjct 474 GGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAG-AGTTTCCTGATGGGC 532
Query 527 CTCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGGACAAGGTTCCTTTCCCA 585
||||||||||||||||||||||||| || ||| |||||||||| ||||| ||||||||||
Sbjct 533 CTCTTGTTGAGTACCAAGCCAAGGTAAT-AAAGTTCTTAGGGGTCAAGGATCCTTTCCCA 591
Query 586 GTTCTCTGCAGACCAAG-TCCTAAACCAGAAATCTA 620
|||||||||||| || | ||||||||||| ||||||
Sbjct 592 GTTCTCTGCAGAGCA-GCTCCTAAACCAGGAATCTA 626
> AT5G17100.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:5623021-5624800 REVERSE LENGTH=1108
Length=1108
Score = 630 bits (341), Expect = 4e-180
Identities = 500/573 (87%), Gaps = 26/573 (5%)
Strand=Plus/Plus
Query 57 GGAGGAGGTTGTCTCTAAAGTCGACAAGGA-AGACGACGAAAGCAG-CAGCGATA--G-C 111
|||||||||| |||||||||||||| |||| || | | | ||| | |||||||| |
Sbjct 166 GGAGGAGGTTATCTCTAAAGTCGACGAGGATAG-C-A-G-CAGC-GACAGCGATATGGAT 220
Query 112 GACGGCAGCGACAGCGAGTGGGCTGGGTATAACTG-GTTACCGGAAACTGAACCAGAGTG 170
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 221 GACGGCAGCGACAGCGAGTGGGCTGGGTATAAC-GTGTTAGCGGAAACTGAACCAGAGTG 279
Query 171 GGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGTAAGATGTA 230
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 280 GGACGTCGACAGCTTTGATGGTCACGAATTTAAAATCAATCCCAGGGTTCGTAAGATGTA 339
Query 231 TTCAAG---CCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287
| | |||| ||| ||||||| |||||||||| ||||||| |||||||| ||||
Sbjct 340 CGGACGTCACCAGCAACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAG 399
Query 288 TAAGGGTTTCCTTCCCGATCATC-TGAACGGAATCTACAATGTTTATCTAGACGAAAAAA 346
||||||||| ||||| ||| | | ||||||||||| || ||||| ||||||||| ||||
Sbjct 400 TAAGGGTTTTCTTCCTGAT-ACCTTGAACGGAATCGACGATGTTGATCTAGACGGTAAAA 458
Query 347 TGGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCCAATGTGTGTGTTAAGA 406
||||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||||||
Sbjct 459 TGGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGA 518
Query 407 AACACAACGAGACCAAGGGAACGACTTTAGAATTGGTAAATGTTGTGAGAGCTACTGAAA 466
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||
Sbjct 519 AACACAACGAGACCAAGGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAA 578
Query 467 GGGGAGCAGCTACATGGAGGTTTTACATCACTTTTATGGCTC-AGGAGTAT-CGTGATGG 524
|||||||||||||||||||||| ||||||||||||||||||| || ||| | | ||||||
Sbjct 579 GGGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAG-AGTTTTC-TGATGG 636
Query 525 GCCTCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGGACAAGGT---TCCTT 580
||||||||||||||||||||||||||| || | ||||||||||| ||| ||||
Sbjct 637 GCCTCTTGTTGAGTACCAAGCCAAGGTAAT-AGTCTTCTTAGGGGATGAGGAACGTCCTG 695
Query 581 TCCCAGTTCTCTGCAGACCAAGTCCTAAACCAG 613
|||||||||||||||| ||||||||||||||||
Sbjct 696 TCCCAGTTCTCTGCAGGCCAAGTCCTAAACCAG 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5