BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326150
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17200.1 | Symbols: | Pectin lyase-like superfamily protein... 1962 0.0
> AT5G17200.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:5653524-5655336 REVERSE LENGTH=1266
Length=1266
Score = 1962 bits (1062), Expect = 0.0
Identities = 1197/1263 (95%), Gaps = 6/1263 (0%)
Strand=Plus/Plus
Query 1 ATGAAATCTTCGTTGTTGTTCT-TCTTGTTATGTTTGTTTCAAATAAACAAATTAGGTTT 59
||||||||||||||||| || | |||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGAAATCTTCGTTGTTCTT-TGTCTTGTTATGTTTGTTTCAAATAAACAAATTATGTTT 59
Query 60 CTGCTTAGAAGAAGAAGCTC-AAAAGTCTAAAAACGGAGTTGGAAGCAATGGATTCATAA 118
|||||||||||||||| ||| ||| || |||||||||| |||||||||||||||||||||
Sbjct 60 CTGCTTAGAAGAAGAATCTCTAAAGGT-TAAAAACGGATTTGGAAGCAATGGATTCATAA 118
Query 119 GTGTCACTAGTTTCGGAGCTATTGGTGATGGAGAGACCGATGATACTAAGGCTTTTCTTA 178
||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||
Sbjct 119 GTGTCACTAGTTTCGGAGCTATTGGCGATGGAAAGACTGATGATACTAAGGCTTTTCTTA 178
Query 179 AGGCATGGGAAGCTGTATGCAAAGGAGGACGCAATACAAAGATTCTAGTGCCTCAAGGGA 238
| |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 179 AAGCATGGGAAGCTGTATGCAAAGGAGGACACAATAGAAAGATTCTTGTGCCTCAAGGGA 238
Query 239 AAACCTTCATGCTTAAGCCTCTTGCATTCATCGGTCCATGCAAGTCTTCTTCTATCTCCT 298
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 239 AAACCTTCATGCTTAAGCCTCTTACATTCATCGGTCCATGCAAGTCTTCGACCATCTCCT 298
Query 299 TCTCGATAAGAGGTAATCTTGTGGCACCGGGTTACACTTGGTATGCGGGAAGATATC-CA 357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 299 TATCGATAAGAGGTAATCTTGTGGCACCGGGTTACACTTGGTATGCGGGAAGATA-CACA 357
Query 358 ACATGGATTAGTTTTGACAGTATCAACGGTCTTGTTGTCACCGGAGGTGGCACCATCGAC 417
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 358 ACATGGATTAGTTTTGACAGTATCAATGGTCTTGTTGTCACCGGAGGTGGTACCATCGAC 417
Query 418 GCTCGTGGTTCTTTGTGGTGGGGCAACGTTAATACTCGCCCCTCCGCAATGCACTTCAAC 477
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 418 GGTCGTGGTTCTTTGTGGTGGGGCAACGTTAATAATCGCCCCTGCGCAATGCACTTCAAC 477
Query 478 AACTGTAATGGTCTTAGGATATCTAATCTCCGACATTTGAACAGTCCTCGGAACCATGTA 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 AACTGTAATGGTCTTAGGATATCTAATCTCCGACATTTGAACAGCCCTCGGAACCATGTA 537
Query 538 GGTCTAAGTTGTTCACAGAACATCGAGGTCACGGGTATAAGGATGACAGCCCCCGGTGAT 597
||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 538 GGTCTAAGTTGTTCACAGAACATCGAGGTCAGGGGTTTAAGGATGACAGCACCCGGTGAT 597
Query 598 AGTCCCAACACGGATGGTATTGACATATCAAACTGTAAAGGAGTCCACATACATGACTCT 657
||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 598 AGTCCAAACACGGATGGTATTGACATATCGAACTGTATAGGAGTCCACATACATGACTCA 657
Query 658 GTGATTGCCACTGGAGATGACTGCATCGCCATTAATAGTGGTTCCTCTCATATCAACATA 717
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 GTGATTGCCACTGGAGATGACTGCATCGCCATTAATAGCGGTTCCTCTCATATCAACATA 717
Query 718 ACCGGCATTTTCTGTGGCCCCGGTCACGGCATCAGCGTAGGAAGTCTTGGAGTAACTGGA 777
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 ACCGGCATTTTTTGTGGCCCCGGTCACGGTATCAGCGTAGGAAGTCTTGGAGTAACTGGA 777
Query 778 GATTTTGCAACTGTTGAAGAAGTGAGGGTAAAGAACTGCACTTTTACAAACACACAGAAT 837
||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 GATTTCGAAACTGTTGAAGAAGTGAGGGTAAAGAACTGCACTTTTACAAAAACACAGAAC 837
Query 838 GGTGTCCGAATCAAGACATACCAGAATGGATCAGGATATGCTCGGAAAATCTCATTCGAG 897
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 838 GGTGTCCGAATCAAGACATACCAGAACGGATCGGGATATGCTCGGAAAATCTCATTCGAG 897
Query 898 GATATCATCATGGTTGCCTCAGAGAACCCTATTATCATAGACCAGACTTACCACAATGGA 957
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GATATCAACATGGTTGCCTCAGAGAACCCTATTATCATAGACCAGACTTACCACAATGGA 957
Query 958 GGCACGAACGGAGGAAGAAGCAAGTCATCTAATAGCTATCAAAACTGTCATTTAGCAGCA 1017
|| ||||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 958 GGTACGAACGGAGGAATAAGCAAGTCATCTAGTAGCTATCAGAACTGTCATTTAACAGCA 1017
Query 1018 AAACAACGGACTCAGTCCGGTAATGGCAAAGGCGTGAGAGTGAGTGATGTGCGTTACTCT 1077
||||||||||||| ||| |||||||| |||||||||| ||||| ||| ||||||||| ||
Sbjct 1018 AAACAACGGACTCCGTCTGGTAATGGGAAAGGCGTGAAAGTGACTGACGTGCGTTACGCT 1077
Query 1078 AGTATCCGTGGGTCATCTGCAAGCGATCAAGCCATTACATTGAACTGCGATGCAGACTTG 1137
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 AGAATCCGTGGGTCATCTGCAAGCGATCAAGACATTACATTGAACTGCGATGCAGACTTG 1137
Query 1138 GGATGCTCAGATATAGTGATGAACAATGTGAATATGGTTTCAGCGACATTTGGTCACAAG 1197
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGATGCTCAGATATAGTGATGGACAATGTGAATATGGTTTCAGCGACATTTGGTCACAAG 1197
Query 1198 GTGTTTGCTACCTGCAAAAATGCTCATGGGTCtttttttGCTTCAAAAGTGAATTGTCTG 1257
||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1198 TTGTTTTCTTCCTGCAAAAATGCTCATGGGTCTTTATTTGCTTCAAAAGTGGATTGTCTG 1257
Query 1258 AAA 1260
|||
Sbjct 1258 AAA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5