BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326186
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17570.1 | Symbols: | TatD related DNase | chr5:5792926-579... 1535 0.0
AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-8343... 350 2e-95
> AT5G17570.1 | Symbols: | TatD related DNase | chr5:5792926-5794792
FORWARD LENGTH=1212
Length=1212
Score = 1535 bits (831), Expect = 0.0
Identities = 929/978 (95%), Gaps = 0/978 (0%)
Strand=Plus/Plus
Query 1 ATGAAACTATTCGACGTGCACTGTCACCTTCAAGACCCGAGGATTATCATCAAAGCTCCT 60
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 23 ATGAAACTGTTCGACGCGCACTGTCACCTTCAAGACCCGAGGATTATCACCAAAGCTCCT 82
Query 61 CAGCTAATCTCCTCCGCCGTTGCTTCCGGCGTCTCTGCCTTCGCCGTCAATGGAGTCTCC 120
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 83 CAGATAATCTCCTCCGCCGTTGCTTCCGGCGTCTCTGCTTTCGCCGTCAATGGAGTCTCC 142
Query 121 GAGAAAGATTGGAATTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTGTTCCTTGC 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 GAGAAAGATTGGAGTTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTGTTCCTTGC 202
Query 181 TTTGGGATCCATCCATGGTATGTAGTAGAGAGGAGTCCTCAATGGTTTGAGACATTGAAG 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 203 TTTGGGATCCATCCATGGTATGTAGCAGAGAGGAGTCCTCAATGGTTTGAGACATTAAAG 262
Query 241 AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGGTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGGTCT 322
Query 301 AAGGGAAGGGAGATTGATTTCTCAGACCAGGTTACTGTGTTTCGTCAACAGCTCGAACTT 360
|||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct 323 AAGGGAAGGGAGATTGATTTCTCAGAACAGGTTACCGTCTTTCGTCAACAGCTTGAACTT 382
Query 361 GCAAAGGAATTGAATAGACCTGCTTCAGTTCATTGTGTCCGTGCATTCGGGGATCTACTC 420
|||||||||||||| | |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 383 GCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTC 442
Query 421 GAGATATTAAAATCTGTGGGGCCCTTTCCTTCTGGTGTCATGCTTCACTCGTATCTAGGT 480
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct 443 GAGATATTAAAATCTGTAGGGCCTTTTCCTTCTGGGGTCATGCTTCACTCGTATTTGGGT 502
Query 481 TCTGCTGAGATGGTTCCTGAATTTGCTAAGCTCGGTGCATATTTCTCCTTCTCCGGTTTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TCTGCTGAGATGGTTCCTGAATTTGCTAAGCTCGGTGCATATTTCTCCTTCTCCGGTTTC 562
Query 541 CTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGATGTTGAAAGCAGTTCCATCTGATAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGATGTTGAAAGCAGTTCCATCTGATAGG 622
Query 601 ATCTTATTGGAAACTGATTCACCAGATGCACTACCAAAGGCAGAGTCAGGTTCTCTCTAC 660
||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 623 ATCTTATTGGAGACGGATTCACCAGATGCACTACCAAAGGCAGAGTCAGGTTGTCTCTAC 682
Query 661 TTTATAGACGGAGATCCTTCTCTACCCAAAGAAGGAAATTCAGCTCAGGATCTTGATTAT 720
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 683 TTTGTAGACGGAGATCCTTCTCTACCCGAAGAAGGAAATTCAGCTCAGGATCTTGATTCT 742
Query 721 GCTTCAAATGATAAGTCTAATGTGTCTATTGACTCGATGAAGTTGCCAAAGGAAACACTT 780
|||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 743 GCTTCATATGATAAGCCTAATGTGTCTAGTGACTCGATGAAGTTAACAAAGGAAACACTT 802
Query 781 AATCATCCGGCTAATATTCATATGGTACTCGGGTATGTAGCACGGTTGTTGGACATGAAG 840
||||| ||||||||||||||||| |||||||| |||||||| | ||||||||| ||||||
Sbjct 803 AATCACCCGGCTAATATTCATATCGTACTCGGATATGTAGCGCAGTTGTTGGATATGAAG 862
Query 841 AATGAAGAACTCGCAGAACTAAGCTACCAGAATGCTGTTCGGTTATTCTCTTACGAAGGT 900
|||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 863 AATGAAGAACTCGCGGAACTAAGTTATCAAAATGCTGTTCGGTTATTCTCTTACGAAGGT 922
Query 901 TCGAAGATGCTTCTTGAGAGAGGTACTGGTGATGTCTCTGGTCACAATCAAAACCATTGA 960
|| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||| | |
Sbjct 923 TCAAAGATACTTCTTGACAGAGGTACTGGTGATGTCTCTGGTCACACTCAAAACCAGTCA 982
Query 961 ACAACACATGTATCATGA 978
||||||||||||||||||
Sbjct 983 ACAACACATGTATCATGA 1000
> AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-834350
FORWARD LENGTH=819
Length=819
Score = 350 bits (189), Expect = 2e-95
Identities = 453/575 (79%), Gaps = 40/575 (7%)
Strand=Plus/Plus
Query 100 TTCGCCGTCAATGGAGTCTCCGAGAAAGATTGGAATTTGGTCAAAGAGATGGGAGCTAAA 159
||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||| |
Sbjct 100 TTCGCAGTCAATGGAACCTCCGAGAAAGATTGGAACTTGGTGAAAGAGATGGGAGAGACG 159
Query 160 TACCCTTCTGTTGTTCCTTGCTTTGGGA-TCCATCCATGGTATGTAG-TAGAGAGGAGTC 217
|| ||||||||||||||||||||| ||| ||||||| |||| | | | | || || || |
Sbjct 160 TATCCTTCTGTTGTTCCTTGCTTT-GGACTCCATCCTTGGTTTATTGCT-GATAGAAGCC 217
Query 218 CTCAATGGTTTGAGACATTGAAG-AGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGA 276
|||| |||||| | ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 218 CTCATTGGTTTAAAACATTGAAGAAG-TTCTTTGAGACCACTCCTACTGCTGCTGTTGGA 276
Query 277 GAAATTGGTTTGGACAAAGGGTC--TAAG--GGAAGGGAGATTGATTTCTCAGACCAGGT 332
||||||||||| |||||||| || | || ||| || | ||||||| |||||||||| |
Sbjct 277 GAAATTGGTTTAGACAAAGG-TCCCTTAGCAGGA-GG-A-ATTGATTACTCAGACCAGCT 332
Query 333 TACT-GTGTTTCGTCAACAGCTCGAACTTGCAAAGGAATTGAATAGACCTGCTT-CAGTT 390
| | |||||||| | |||||| ||||||||||| ||| |||| | ||| | | |||||
Sbjct 333 -AGTCGTGTTTCGCCCACAGCTTGAACTTGCAAAAGAACTGAACAAACCAG-TAGCAGTT 390
Query 391 CATTGTGTCCG-TGCATTCGGGGATCTACTCGAGATATTAAAATCTGTGGGGCCCTTTCC 449
||||| || | |||||| | ||||| || |||||| | | ||| | ||||| |||||
Sbjct 391 CATTGCATC-GATGCATTTGATGATCTCCTAGAGATAATGAGATCCATAGGGCCTTTTCC 449
Query 450 TTCTGGTGTCATGCTTCACTCGTATCTA-GGTTCTGCTGA-GATGGTTCCTGAATTTGCT 507
| |||| || || ||||| || | || | ||||| ||||| | || ||||| || | |||
Sbjct 450 TGCTGGGGTGATTCTTCATTCAT-TCAATGGTTCAGCTGAAGTTG-TTCCTAAACTCGCT 507
Query 508 AAGCTCGGTGCATATTTCTCCTTCTCCGG-T--TTC-CTTATGTCCAT-GAGTGAGAAAA 562
|||| |||||||| ||||| || || || | ||| |||| | || || ||||||||
Sbjct 508 GAGCTTGGTGCATACTTCTCTTTTTCTGGCTGGTTCACTTA---C-ATTGA-TGAGAAAA 562
Query 563 AAGCCAAGAAGA-TGTTGAAAGC-AGTTCCATCTGATAGGATCTTATTGGAAACTGATTC 620
|||||||||| | |||||| | | |||| || |||||| |||||||||| || |||||
Sbjct 563 TTGCCAAGAAGACT-TTGAAATCGA-TTCCTTCCGATAGGCTCTTATTGGAGACGGATTC 620
Query 621 ACCAGATGCACTACCAAAGGCAGAGTCAG-GTTCT 654
||| || | ||||||| |||| | || |||||
Sbjct 621 ACCTGACGGGTTACCAAAATCAGA-TGAGAGTTCT 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5