BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326200
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17720.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 741 0.0
> AT5G17720.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:5845934-5847653 FORWARD LENGTH=1332
Length=1332
Score = 741 bits (401), Expect = 0.0
Identities = 464/495 (94%), Gaps = 2/495 (0%)
Strand=Plus/Plus
Query 1 ATGATTGCTTCGAGTTTCTCAGAAAAATGTATATCAGTCATCAACGGAGCTCCAAGTTGG 60
|||||| |||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 1 ATGATTACTTCGAGTTTCTCAGAAAAATGTACATCAGTTATTAACGGAGCTCCAAGTTGG 60
Query 61 GCCGTCTTC-TTCtttttttACCTCCTCGACGCTTTTCTTTGCATCGTTTTCAGATTCCT 119
|| |||||| ||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 61 GCGGTCTTCTTTC-TTTTTGACCTCCTCGACTATTTTCTTTGTATCGTTTTCAGATTCCT 119
Query 120 CGACGAAGTTATGGAAGAAAAATTAGAGTCTTGTCACTGTAAAAACCCTCAAGAGAAAAC 179
||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||
Sbjct 120 CGACGAAGTTATGGAAGAAAAATCAGAGTCTTGTCATTGTAATAACCCTCGAGAGAAAAC 179
Query 180 AGATTTTGCAGGGTACGAGTTTCTTTCGGAGACTCTCTATCGGAGGAGAAACGTTTTCCG 239
| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACATTTTGCAGAATACGAGTTCCTTTCGGAGACTCTCTATCGGAGGAGAAACGTTTTCCG 239
Query 240 ACAGGCCGGTTTTCTCCGGTTTGCGAAAAAACTCCCTGAGATAACCAAGAAAATTGGTAT 299
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 240 ACAGGCCGGTTTTCTCCGGTTTGCGAATAAACTCCCTGAGATAACCAAGAAAATAGGTAT 299
Query 300 CGTTACATTCCTGAGAAAATTCCTTTTTTCTCAGACGATGAAGAAAGTCTCTCATGAGGT 359
|||||| |||||||||||||| |||||| |||| || ||||| |||||||||||||||||
Sbjct 300 CGTTACTTTCCTGAGAAAATTTCTTTTTCCTCATACAATGAACAAAGTCTCTCATGAGGT 359
Query 360 TGCAAACCGGTGGTCTGATTGTGGTTGCAAGACTTGTGTTTCTTGGACCAACAGTGATAA 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 TGCAAACCGGTGGTCTGATTGTGGTTGCAAGACTTGTGTTTCTTGGATCAACACTGATAA 419
Query 420 ACTTAACGTGATCGTCAAGCAACCTTCAATATCAGATTTGTTGATAAGCAACAAACCGGT 479
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 ACTTAACGTAATCGTCAAGCAACCTTCAATATCAGATTTGTCGATAAGCAACAAACCGGT 479
Query 480 AGAGAACGTTATTTT 494
|||||||||||||||
Sbjct 480 AGAGAACGTTATTTT 494
Score = 446 bits (241), Expect = 3e-124
Identities = 261/271 (96%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 848 ATAGCATGCACAATGTGATATGCGGAGGAGCGAAATTCACGGATAAACACCTTGAAACTT 907
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ATAGCATGCACAATGTAATATGCGGAGGAGCGAAATTCACGGATAAACACCTTGAAACTT 1114
Query 908 TGATAAAATCCGGTGTTAAAATCAATGTGGTGCAAGGGGATAAAGATGTTGTTGTTCCTA 967
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1115 TGATAAAATCCGGTGTTAAAATCAATGTGATGCAAGGGGATAAAGATGTTGTTGTTCCTA 1174
Query 968 TTGATTGTCTATGGAACATGAAAGGGAAGTTCCCTGCGGTTGAAGTCGAGGTTATCGCCG 1027
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1175 TTGATTGTCTATCGAACATGAAAGGAAAGTTCCCTGCGGTTGAAGTCGAGGTTATCGCTG 1234
Query 1028 GAACTGATCATAGTACGGTCATAATGAGTAGGAGAGAGGTCTTTGTTGCAAGCCTTGTAA 1087
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1235 GGACTGATCATAGTACGGTCATAATGAGTAGGAGAGAGGTCTTTGCTGCAAACCTTGTAA 1294
Query 1088 GTTTGTGGGCTTCTTCCCAAAAGAAACAAAA 1118
||||||||||| ||||| |||||||||||||
Sbjct 1295 GTTTGTGGGCTACTTCCGAAAAGAAACAAAA 1325
Score = 294 bits (159), Expect = 1e-78
Identities = 194/211 (92%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 516 AACTAACTACAGATTCTTTGCTGTCGATCTTCTCGGGTTTGGAGACAGCCCGAAACCAAG 575
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 570 AACTAACTACAGATTCTTTGCTATCGATCTTCTTGGATTTGGAGACAGCCCGAAACCAAG 629
Query 576 AGCCAGTCAATATTCGTTTAATGAACATGTCGAAATGATCGAGAAATCGGTTATTTTACC 635
||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 630 AGCCAGTCAGTATTCGTTGAAAGAACATGTCGAAATGATCGAAAAATCGGTTATTTTACC 689
Query 636 AAATAATTTGACttttttttCATGTTGTAGCACATTCCATGGGATGTATCATTGCAATAG 695
|||||||||||||| || |||||||| ||||| ||||||||||| ||||||| |||||
Sbjct 690 AAATAATTTGACTTCATTC-CATGTTGTCGCACACTCCATGGGATGCATCATTGGAATAG 748
Query 696 CCTTAACTGCAAAATTCTCCGACAACGTCAA 726
||||| |||||||||||||||||| ||||||
Sbjct 749 CCTTAGCTGCAAAATTCTCCGACAGCGTCAA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5