BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326224
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase ... 782 0.0
> AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase
3 | chr5:5987187-5988885 FORWARD LENGTH=708
Length=708
Score = 782 bits (423), Expect = 0.0
Identities = 472/496 (95%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCCTAGAGGCAATCTGAGAGCGGTGGCTCTTATCGCCGGCGATAACCACGTC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 35 ATGGAAGCTCCTAGAGGAAATCTGAGAGCGGTGGCTCTTATCGCCGGCGATAACAACGTC 94
Query 61 CGGGGATGTCTTCAATTCGTACAAGACACTTT-CGGGACCACTCATGTTACCGGGAAGAT 119
|| || |||||||||||||||||||||| ||| ||| || |||||||| |||||||||||
Sbjct 95 CGAGGCTGTCTTCAATTCGTACAAGACA-TTTCCGGAACTACTCATGTCACCGGGAAGAT 153
Query 120 CTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAA 213
Query 180 TGGCTGCAACTCTACTGGACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAA 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TGGCTGCATCTCTACTGGACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAA 273
Query 240 TGAGGAAGAGCGTCATGCAGGCGATTTGGGTAACATTCTTGCAGGATCAGATGGTGTTGC 299
||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 274 CGAGGAAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGGTGTTGC 333
Query 300 TGAAATCTCAATCAAAGACAAACAGATACCACTTAGTGGGCAGTATTCTATACTGGGGAG 359
|||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 334 TGAAATCTTAATCAAAGACAAACATATACCGCTTAGTGGGCAGTATTCCATACTCGGGAG 393
Query 360 GGCGGTTGTTGTGCATGCTGATCCTGATGACCTTGGGAAAGGAGGGCACAAGCTTAGCAA 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGGAGGGCACAAGCTTAGCAA 453
Query 420 ATCAACGGGAAACGCAGGCTCGAGAGTTGGATGCGGTATCATCGGACTTCAATCATCTGC 479
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 454 ATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGGTATCATCGGACTTCAATCATCTGC 513
Query 480 AGATGCTAAACTGTAG 495
||||||||||| |||
Sbjct 514 GGATGCTAAACTATAG 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5