BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326229
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18150.1 | Symbols: | Methyltransferase-related protein | c... 399 4e-111
AT5G14602.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 128 2e-29
> AT5G18150.1 | Symbols: | Methyltransferase-related protein |
chr5:6000014-6000331 REVERSE LENGTH=231
Length=231
Score = 399 bits (216), Expect = 4e-111
Identities = 226/231 (98%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1 ATGTGTCCGATGAGGTTCTTATTGGTTTTCTTCTCAGCTGTACTCGCCGGATATTTCGCA 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTCCGATGAGGTTCTTATTGGTGTTCTTCTCAGCTGTACTCGCCGGATATTTCGCA 60
Query 61 TGGAAGACGGTGAGTTCTTCGCCGGAATTCGATTCACCGGACGAATTGAATGAGAAACAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGAAGACGGTGAGTTCTTCGCCGGAATTCGATTCACCGGACGAATTGAATGAGAAACAA 120
Query 121 GAACTCAATCTCAAAAAGAGGATGGAGAATGGGTTCTGGGTGTTCGTCGATATGGCTAGC 180
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GAACTCAATCTCAAAAAGAAGATGGAGAATGGGTTTTGGGTGTTCGTCGATATGGCTAGC 180
Query 181 GGAAGATACCTTTGGAGGAATCTTAAGGAAATGAGAGAGAAAACTCAATGA 231
||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 181 GGAAGATACCTTTGGAGGAATCTCAAGGAAATGAGAGAGAAATCTCAATGA 231
> AT5G14602.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:4709436-4709871 FORWARD LENGTH=436
Length=436
Score = 128 bits (69), Expect = 2e-29
Identities = 189/245 (77%), Gaps = 16/245 (7%)
Strand=Plus/Plus
Query 1 ATGTGTCCGATGAGGTTCT-TATTGGTTTTCTTCTCAGCTGTACTCGCCGGATATTTCGC 59
|||||||| |||| || | |||| || |||||||| || |||||||| |||||| ||||
Sbjct 1 ATGTGTCCCTTGAGATT-TGTATTAGTGTTCTTCTCGGCGGTACTCGCAGGATATATCGC 59
Query 60 ATGGAAGACGGTGAGTTCTTCGCCGG-A--A-T-T----CGA--T-TCACCGGACGAATT 107
|||| |||||||| |||| |||||| | | | | ||| | | || | ||||
Sbjct 60 GTGGAGGACGGTGAATTCTACGCCGGAACTATTCTCAGACGAGTTATTACAAGCCGAAGC 119
Query 108 GAATGAGAAACAAGAACTCAATCTCAAAAAG-AGGATGGAGAATGGGTTCTGGGTGTTCG 166
|| || ||||||| |||| || || || || | |||||| |||||||| ||| |||||
Sbjct 120 CAAGGAAAAACAAGGACTCGATTTC-AAGAGAAAGATGGATAATGGGTTATGGACGTTCG 178
Query 167 TCGATATGGCTAGCGGAAGATACCTTTGGAGGAATCTTAAGGAAATGAGAGAGAAAACTC 226
| ||||||||||||||||||||||||||||| ||||| ||||| ||| | ||| || ||
Sbjct 179 TTGATATGGCTAGCGGAAGATACCTTTGGAGAAATCTCAAGGAGATGCGTCAGAGAAGTC 238
Query 227 AATGA 231
|||||
Sbjct 239 AATGA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5