BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326242
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18270.1 | Symbols: ANAC087 | Arabidopsis NAC domain contain... 1648 0.0
AT3G04060.1 | Symbols: anac046, NAC046 | NAC domain containing ... 573 1e-162
AT5G53950.1 | Symbols: CUC2, ANAC098, ATCUC2 | NAC (No Apical M... 224 1e-57
AT1G54330.1 | Symbols: ANAC020, NAC020 | NAC domain containing ... 67.6 2e-10
> AT5G18270.1 | Symbols: ANAC087 | Arabidopsis NAC domain containing
protein 87 | chr5:6040919-6042938 REVERSE LENGTH=1525
Length=1525
Score = 1648 bits (892), Expect = 0.0
Identities = 970/1008 (96%), Gaps = 3/1008 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTTGTGGTCGAAGAAGGCGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGAT 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 196 ATGGCGGTTGTGGTTGAAGAAGGTGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGAT 255
Query 61 TTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATATTACCTTAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 256 TTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATGTTACCTTAAG 315
Query 121 GAGAAGGTTTTAAACAGCCGATTCACGGCGGTGGCCATGGGAGAAGCTGATCTCAACAAG 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 316 GAGAAGGTTTTAAACAGCCGATTCACGGCTGTGGCCATGGGAGAAGCTGATCTCAACAAG 375
Query 181 TGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCTTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 TGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTTC 435
Query 241 TGTCAAAGGGACAGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACAGAGTCCGGA 300
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 436 TGTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAGGA 495
Query 301 TATTGGAAAGCGACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 360
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TACTGGAAAGCCACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 555
Query 361 ATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGG 615
Query 421 GTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATCACAATCTCCCCAAATCTGCA 480
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 616 GTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTCCCAAAATCTGCA 675
Query 481 AGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACTACAACCCAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 676 AGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACCACAACCCAA 735
Query 541 CCATTGACGAGAATACCCATTGAAGATCTCACGAGGATGGATTCTCTAGAGAACATTGAT 600
||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 736 CCAATGACGAGAATACCCGTTGAAGATTTCACAAGGATGGATTCTCTAGAGAACATTGAT 795
Query 601 CATCTCCTAGACTTTTCATCTCTTCCTCCCCTCATAGATCCAAGTTTCATGGGTCAAACC 660
|||||||||||||| |||||||||||||| |||||||| || ||||||||| ||||||||
Sbjct 796 CATCTCCTAGACTTCTCATCTCTTCCTCCTCTCATAGACCCGAGTTTCATGAGTCAAACC 855
Query 661 GAACAACCAAACTTCAAACCCATCAACCCTCCGACTTACAATATCTCATCACCAATCCAA 720
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 856 GAACAACCAAACTTCAAACCCATCAACCCTCCAACTTACGATATCTCATCACCAATCCAA 915
Query 721 CCCCATCATTTCAATACTTACCAATCAATCTTTAACCACCAGGGTTTTGGTTCTGCTTCG 780
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 916 CCCCATCATTTCAATTCTTACCAATCAATCTTTAACCACCAGGTTTTTGGTTCTGCTTCG 975
Query 781 GGTTCTACATACAACAACAAC---GAGATGATCAAGATGGAGCAATCACTTGTTAGTGTA 837
|| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 976 GGCTCTACGTACAACAACAACAACGAGATGATCAAGATGGAGCAATCACTTGTTAGTGTA 1035
Query 838 TCTCAAGAAACATGCCTAAGCTCAGATGTTAACGCGAACACGACTACAACCACGGAGGTA 897
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1036 TCTCAAGAAACATGCCTAAGCTCAGATGTGAACGCGAACATGACTACAACCACGGAGGTA 1095
Query 898 TCCTCGGGTCCGGTAATGAAACAAGAGATGGGGATGATGGGAATGGTGAATGGTAGCAAG 957
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1096 TCTTCGGGTCCTGTAATGAAACAAGAAATGGGGATGATGGGAATGGTGAATGGTAGCAAG 1155
Query 958 TCGTATGAAGATCTATGTGACTTGAGGGGGGTCTTATGGGACTTCTAA 1005
||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1156 TCGTATGAAGATCTATGTGACTTGAGGGGGGACTTGTGGGACTTCTAA 1203
> AT3G04060.1 | Symbols: anac046, NAC046 | NAC domain containing
protein 46 | chr3:1053366-1055163 REVERSE LENGTH=1487
Length=1487
Score = 573 bits (310), Expect = 1e-162
Identities = 550/662 (83%), Gaps = 31/662 (5%)
Strand=Plus/Plus
Query 11 TGGTCGAAGAAGGCGTG-GT-G-T-TGAATCATGGAGGTGA--A-GAGCTTGTGGATTTG 63
|||| |||||||||| | || | | ||||||| ||||| || | ||| | |||||||||
Sbjct 213 TGGTGGAAGAAGGCG-GCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTG 271
Query 64 CCACC-TGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-ATTACCTTAAGG 121
|| || |||||| ||||||| || || || |||||||| ||||| | | ||||| || |
Sbjct 272 CCTCCGGGGTTTC-GGTTTCACCCTACTGATGAAGAGATAATAAC-TCACTACCTCAAAG 329
Query 122 AGAAGGTTTTAAACAGCCGATTCACGGCGGTGGCCATGGGAGAAGCTGATCTCAACAAGT 181
||||||| || |||| |||||| || |||| || || || |||| || |||||||||
Sbjct 330 AGAAGGTCTTCAACATCCGATTTACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGA 389
Query 182 GTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCTTCT 241
||||| |||||| | ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 390 ACGAGCCATGGGATCTACCAAAGATTGCAAAGATGGGGGAGAAGGAGTTTTACTTTTTCT 449
Query 242 GTCAAAGGGA-CAGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACAGAGTCCGGA 300
| || ||||| | ||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 450 GCCAGAGGGATC-GGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGT 508
Query 301 TATTGGAAAGCGACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 360
|||||||| |||||||||||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct 509 TATTGGAAGGCGACCGGGAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGG 568
Query 361 ATGAAGAAAACACTTGTGTTT-TATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTG 419
||||||||||||||||| ||| |||| |||||||||||| |||||||||||||| |||||
Sbjct 569 ATGAAGAAAACACTTGT-TTTCTATACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTG 627
Query 420 GGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATCACAATCTCCCCAAATCTGC 479
||| |||||||||||||||||||| || |||||||| ||||| || ||||||||| | ||
Sbjct 628 GGTTATGCATGAATATCGTCTTGATGGAAAATATTCTTATCATAACCTCCCCAAAACCGC 687
Query 480 AAGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACTACAACCCA 539
|||||| |||||||| |||||||||||||||||||||||| |||| |||||||| | |
Sbjct 688 AAGGGATGAATGGGTGGTGTGTAGGGTTTTTCACAAGAACGCTCCTAGTACTACAATC-A 746
Query 540 ACCATTGACGAGAATACCCATTGAAGATCTCACGAGGATGGATTCTCTAGAGAACATTGA 599
| | | || | || || | | ||||| ||||| |||||||| || ||||||||
Sbjct 747 -CTACT-AC-A-AA-AC--A---AC--TCTCA--AGGATTGATTCTCTTGATAACATTGA 792
Query 600 TCATCTCCTAGACTTTTCATCTCTTCCTCCCCTCATAGATCCAAGTTTCATGGGTCAAAC 659
||||||| ||||||| |||||||| ||||| ||||||||||| ||||| |||||||| |
Sbjct 793 TCATCTCTTAGACTTCTCATCTCTCCCTCCTCTCATAGATCCGGGTTTCTTGGGTCAACC 852
Query 660 CG 661
||
Sbjct 853 CG 854
> AT5G53950.1 | Symbols: CUC2, ANAC098, ATCUC2 | NAC (No Apical
Meristem) domain transcriptional regulator superfamily protein
| chr5:21901966-21903823 REVERSE LENGTH=1156
Length=1156
Score = 224 bits (121), Expect = 1e-57
Identities = 362/474 (76%), Gaps = 34/474 (7%)
Strand=Plus/Plus
Query 64 CCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-ATTACC-T-TAAG 120
||||| ||||||||||||||||| || ||||||||| |||| || | |||||| | | |
Sbjct 80 CCACCGGGTTTCAGGTTTCATCCCACGGACGAAGAGCTCATCAC-TCATTACCTTCTCCG 138
Query 121 GAGAAGGTTTTAAACAGCCGATTCAC-GGCGGTGGCCATGGGAGAAGCTGATCTCAACAA 179
| || || | || | | ||| | || || ||||| | ||||| ||||||||||||
Sbjct 139 CA-AA-GTCCTCGACGGTTGCTTCTCAAGCCGT-GCCATCGCAGAAGTTGATCTCAACAA 195
Query 180 GTGTGAGCCTTGG-GATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCT 238
||||||||||||| | || || ||| || |||||||| |||||||| | |||||||
Sbjct 196 GTGTGAGCCTTGGCAACTT-CCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCT 254
Query 239 TCT-GTCAAAGGGACAGGAAGTATCCGACCGGGA-TGAGGACGAACCGTGCGACAGAGTC 296
| | | | | ||| |||||||||||| ||||| |||| || ||| | || || ||| |
Sbjct 255 T-TAGCCTCCGTGACCGGAAGTATCCGA-CGGGACTGAGAACTAACAGAGCAACTGAGGC 312
Query 297 CGGATATTGGAAAGCGACCGGGAAGGATAAG-GAGATCTTCAAAG-GCAAAG-GTTGT-- 351
|| || |||||||| ||||| || || || |||||||| || ||||| ||||
Sbjct 313 TGGTTACTGGAAAGCTACCGGAAAAGA-CAGAGAGATCTT--TAGTTCAAAGACTTGTGC 369
Query 352 -CTCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAA 410
|| |||||||||||||| || ||||| ||||| | |||||||||||| ||||| || ||
Sbjct 370 ACTTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAAGGAGAGAA 429
Query 411 GACTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATAT-TCGTATCACAAT-C-T 467
|| ||||||||| |||||||||||||||||||||||||||| | || || | || | | |
Sbjct 430 GAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAAT-TCTCTTA-C-CATTTCAT 486
Query 468 CCCCA-AATCTGCAAGGGACGAATGGGTCG-TGTGTAGGGTTTTTCACAAGAAC 519
| | | || || ||||| | |||||||| | | | ||||||||| || || |||
Sbjct 487 CTCAAGAAGCTCCAAGG-ATGAATGGGT-GATCTCTAGGGTTTTCCAGAA-AAC 537
> AT1G54330.1 | Symbols: ANAC020, NAC020 | NAC domain containing
protein 20 | chr1:20279567-20280952 REVERSE LENGTH=1117
Length=1117
Score = 67.6 bits (36), Expect = 2e-10
Identities = 71/87 (82%), Gaps = 5/87 (6%)
Strand=Plus/Plus
Query 357 TGGG-ATGAAGAAAACACTTGTGTT-TTATAGAGGAAGAGCTCCAAAAGGTGAAAAG-AC 413
|||| |||||||| ||||| || || |||||||||||| ||||| | || | ||
Sbjct 377 TGGGAATGAAGAAGACACTGGT-TTATTATAGAGGAAGGGCTCCTCATGG-CCTTCGTAC 434
Query 414 TAATTGGGTCATGCATGAATATCGTCT 440
|||||||||||||||||||||||||||
Sbjct 435 TAATTGGGTCATGCATGAATATCGTCT 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5