BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326244
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18290.1 | Symbols: SIP1;2, SIP1B | Aquaporin-like superfami... 1197 0.0
> AT5G18290.1 | Symbols: SIP1;2, SIP1B | Aquaporin-like superfamily
protein | chr5:6055028-6056700 REVERSE LENGTH=1195
Length=1195
Score = 1197 bits (648), Expect = 0.0
Identities = 704/732 (96%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTC 353
Query 61 TCGGCGACGTTTGGGATTCAGACGGCGGCGATTGTTTCCGCAGTCGGGTTTCATGGCATC 120
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct 354 TCGGCGACGTTTGGGATACAGACGGCGGCGATTGTTTCCGCCGTAGGGTTTCATGGTATC 413
Query 121 ACTTGGGCTCCTCTGGTGATCTCAACGTTGGTTGTTTTTGTCTCCATATCGATTTTTACG 180
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 414 ACTTGGGCTCCTCTTGTGATCTCAACGTTGGTTGTTTTTGTCTCCATCTCGATTTTTACG 473
Query 181 GTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTAT 533
Query 241 ACCGCCGGAGTTTCCAGAGATTCTCTATTCTCCTTGGCGATTAGATCTCCTGCTCAGGCT 300
|||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 534 ACCGCCGGTGTTTCCAGTGATTCTCTCTTCTCCTTGGCCATTAGATCTCCTGCTCAGGCA 593
Query 301 GTTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ATTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACT 653
Query 361 AAGATTGGAGGAAAGCCTTCATTGCAAGTTGGTGCACACAATGGAGCTATTGCTGAAGTG 420
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 654 AGGATTGGAGGAAAGCCTTCATTGCAATTTGGTGCACACAATGGAGCTATTTCTGAAGTG 713
Query 421 ATCCTAAGTTTTAGTGTTACATTTTTGGTGTTACTAATTATCCTAAGAGGTCCTCGAAAA 480
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 714 GTCCTAAGTTTTAGTGTTACATTTTTGGTTTTACTAATTATCCTAAGAGGTCCTCGAAAA 773
Query 481 CTGCTAGCTAAAACGTTCTTGCTCGCTCTCGCTACCGTATCAGTGTTTGTCGTAGGATCT 540
||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 774 CTGCTCGCGAAAACGTTCTTGCTCGCACTCGCTACCGTATCGGTGTTTGTCGTAGGTTCT 833
Query 541 AAATTCACTAGACCATTCATGAATCCTGCCATTGCATTTGGGTGGGCATATATATACAAG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 834 AAATTCACTAGACCATTCATGAATCCTGCCATTGCGTTTGGGTGGGCATATATCTACAAG 893
Query 601 TCTCACAACACATGGGACCATTTCTATGTGTATTGGATCAGCTCCTACACCGGAGCTATT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 894 TCTCACAACACATGGGACCATTTTTATGTGTATTGGATCAGCTCCTACACCGGAGCTATT 953
Query 661 TTATCTGCGATGCTCTTTCGAATTCTATTTCCGGCTCCACCTCTGGTTCAGAAAAAACAG 720
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 954 TTATCTGCGATGCTCTTTAGAATTATATTTCCGGCTCCACCTCTGGTTCAGAAAAAACAG 1013
Query 721 AAGAAAGCTTGA 732
||||||||||||
Sbjct 1014 AAGAAAGCTTGA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5