BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326285
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18890.1 | Symbols: | Inosine-uridine preferring nucleoside... 2211 0.0
AT5G18860.1 | Symbols: | inosine-uridine preferring nucleoside... 1659 0.0
> AT5G18890.1 | Symbols: | Inosine-uridine preferring nucleoside
hydrolase family protein | chr5:6301652-6304088 FORWARD LENGTH=1653
Length=1653
Score = 2211 bits (1197), Expect = 0.0
Identities = 1498/1638 (91%), Gaps = 42/1638 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAACTCTGGTAATAGTAATAAGAACAACAATAAAGGTGAGAATGATTTCGCGGAG 60
||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAGAAACTCTGCTAGTAGTAATAAGAACAACAATAAAGGTCAGAATGATTTCGCGGAG 60
Query 61 ATGGAGTATATGAACATAACCATTGTTACTTCAAACGAACCTTATGGAATACCCGACAGT 120
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 61 ATGGAGTATATGAACATAACCGTTGTTACTTCAAACGAACCTTATGGATTATTCGACAGT 120
Query 121 TCAAATCCATTCTTTTATaaaaaaaGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAATCCATTCTTTTATAAAAGAAGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTT 180
Query 181 CACAGTGGTCATGTTCAGAGGGGTTTGCGCGACCCAATCTGCATATCGAGAAGCGGAAAA 240
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CACAGTGGCCATGTTCAGAGGGGTTTGCGCGACCCAATCTGCATATCGACTAGCGGAAAA 240
Query 241 GGAAACTGCAAGGATGGTTACACAAAAGAGACCTTCGGGCCTGATTCAGTTCGTGTACTT 300
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 241 GGAAACTGCAGGGATGGTTACACAAAAGAGACCTCCGGACCTGATTCAGTTCGTGTACTT 300
Query 301 GTCGCAACACGAGCTAAACCGAGCAAGAACTTCAACAGTGAACTGGATAGAGAGTTCTAT 360
|||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||
Sbjct 301 GTCGCAACACGAGCTAAACCGAGCAAGAACTTGAATAGTGAACTGGATAGAGAATTTTAT 360
Query 361 GA-CGACTTTTTGGAAGTTTTGAACAGGCCTGGAGAAACAGGGAGGTTTAACTTTTCAAC 419
|| | | ||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||
Sbjct 361 GATC-ATTTTTTGGAAGTTTTGAATAGGCCTGAAGAAACGGGGAGGTTTCACTTTTCAAC 419
Query 420 TCAGTTTCTGTACTATAGAGAAGAATTGTTCATAGCA-AATCTTAGTAACACACAGCTCG 478
|||||||||||| || ||||||||||||||||||||| || |||| |||| ||| ||| |
Sbjct 420 TCAGTTTCTGTATTACAGAGAAGAATTGTTCATAGCAGAA-CTTAATAACTCACGGCTGG 478
Query 479 GAGGAAAGCCTGTTATTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCT 538
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 GAGGAAAGCCTGTTGTTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTTT 538
Query 539 ATCTCCTTAAAGTTCCAGTGGAAATTATAGATTTGAAGGCGGTTATCGTGAGCCCAACTG 598
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 539 ATCTCCTTAAAGTTCCAGTGGAAATCATAGATTTGAAGGCGGTTATCGTGAGCCCAACCG 598
Query 599 GTTGGGCTAATGCAGCGACAATTGATGTGGTCTACGATCTTTTTCATATGATGGGACGCG 658
||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 599 GTTGGGCTAATACAGCGACAATTGATGTGGTCTACGATCTGCTGCATATGATGGGACGCG 658
Query 659 ATGACATTCCGATCGGTCTAGGAGATATGTTCGCC-TTGAACCAATCTGAACCGGGTTTT 717
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct 659 ATGACATTCCGGTCGGTTTAGGAGATATGTTCGCCATT-AACCAATCTGAACCGGTTTTT 717
Query 718 CCATCTGCTGGAGACTGCAAGTACGCCAAAGCGGTTCCCCAAGGCTGTGGTGGTTTTCTT 777
||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 718 CCATCTGCTGGTGACTGCAAGTACGCCAAAGCGGTTCCACAAGGTTGTGGCGGTTTTCTT 777
Query 778 GATTCCGACACTCTCTATGGTCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGAAACACT 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 778 GATTCCGACACTCTCTATGGCCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAG--GTA-T 834
Query 838 GCAGAGAACTCAGTGGCAAATGGAGCTCCGAGGGACACTGATCGGACTGAAATCCGACAA 897
||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 835 ---GAGAACTCAGTGGCACATGGAGCTCCGAGCGACACTGATCGGCCTGAACTCCGACAA 891
Query 898 CCTCTGGCACTTGAAGTTTGGCAAAATCTGACCAAATCTGTTAATGAAGTGTCAAAGATC 957
|||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 892 CCTCTGGCCCTTGAAGTTTGGCAAAATCTGACCAAATCTGTTGATGAAGTGTCTAAGATC 951
Query 958 ACTGTACTAACCAATGGACCGTTGACTAGCTTAG----------C-CA--AGAT------ 998
|| ||||||||||||||||| || |||||||||| | || ||||
Sbjct 952 ACCGTACTAACCAATGGACCATTAACTAGCTTAGCCAAAATCATCTCATCAGATAAAAAC 1011
Query 999 T-AT-CTC----ATC-A-GAAGTTTACATCGTCGGTGGACATATAAGCCGTGAAAAATCT 1050
| || ||| ||| | |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1012 TCATCCTCAATAATCAAGGAAGTTTACATCGTGGGTGGACATATAAGCCGTGGAAAATCA 1071
Query 1051 GACAAAGGGAACGTATTCACAGTTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTT 1110
|||||||||||| |||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1072 GACAAAGGGAACATATTCACAGTTCCTTCGAATTCCTACGCTGAATTCAATATGTTTCTT 1131
Query 1111 GATCCTTTAGCAGCTAAGACCATTCTTGAATCAGGTCTAAACATCATACTCATCCCTCTA 1170
|||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 1132 GATCCTTTAGCAGCTAAGACTGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTA 1191
Query 1171 GCAACCCAACGCAAGTTTTCTTTTCAACCAATGCTTAATAAACTCTATTCCTCGGCGAAA 1230
|||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| |||||
Sbjct 1192 GCAACCCAACGCGAGTTTTCTTTCCAAGCAATGCTTAATAGACTCTATTCCTCGACGAAA 1251
Query 1231 ACACCGGAAGCTCGGTTTGTGAAACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAAT 1290
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1252 ACACCCGAAGCTCGGTTTGTGAAACGGCTGCTTACAAGATTGCAAGCTCTTCATCAGAAA 1311
Query 1291 CACAGGAGATACACGCACATAGACATGTTCTTAGGGGAAATTCTTGGAGCAGTTTTCTTG 1350
|| |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1312 CAGAGGAGATACATGCACATGGACATGTTCTTAGGGGAAATTCTTGGAGCAATTTTCTTG 1371
Query 1351 GGAGGAGATCACGCTTCATTGAAGCCGAAACTGCGAGTTGAGCACATAAAAGTGATCGCT 1410
|||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 1372 GGAGGAGATCACGCTTTATTGAAGCCGAAAATGCGAACTGAGTACATAAAAGTGATCGCT 1431
Query 1411 GAAGGGGATGAATCAAAAGATGGTCAGATATTGATTGATAAACTGCATGGAAAACAAATA 1470
||||| |||||||| |||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct 1432 GAAGGAGATGAATCGAAAGATGGCCACATATTGATTGACAAACTGCGCGGAAAACAAATA 1491
Query 1471 AAGATACTCGAAAGAGTAGATCTCAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGAT 1530
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAGATACTCGAAAGAGTGGATTTGAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGAT 1551
Query 1531 GATAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAG-GGAAAGAAATGGAACAC 1589
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1552 GATAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAAAGGAT-GAAATGGAACAC 1610
Query 1590 ACCACCAAGTTCAGAAAC 1607
||||||||||| | ||||
Sbjct 1611 ACCACCAAGTT-ACAAAC 1627
> AT5G18860.1 | Symbols: | inosine-uridine preferring nucleoside
hydrolase family protein | chr5:6290676-6295811 FORWARD LENGTH=3250
Length=3250
Score = 1659 bits (898), Expect = 0.0
Identities = 1395/1627 (86%), Gaps = 65/1627 (4%)
Strand=Plus/Plus
Query 21 TAATAAGAACAACAATAAA-GGTGAGAATGATTTCGCGGAGATGGAGTATATGAACATAA 79
||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1406 TAATAAGAACAACAA-AAATGGTGAGAACGATTTCGCGGAGATGGAGTATATGAACATAA 1464
Query 80 CCATTGTTACTTCAAACGAACCTTATGGAATACCCGACAGTTCAAATCCATTCTTTTATa 139
|| |||||||||||||| |||||||||||| | | || | ||||||||||||||| |||
Sbjct 1465 CCGTTGTTACTTCAAACAAACCTTATGGAAGATCAGATGGCTCAAATCCATTCTTTGATA 1524
Query 140 aaaaaaGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTTCACAGTGGTCATGTTCAGA 199
| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1525 ATAGAAGAACTCCAAAATTTAACCTAGCCCTTGGAGGAGTTCACAGTGGTCATGTTCAGA 1584
Query 200 GGGGTTTGCGCGACCCAATC-TGCATATCGAGAAGCGG---A--AA-AGGAAACTGCAAG 252
||||||||| || |||| | ||| || ||| |||||| | || |||||| || |||
Sbjct 1585 CGGGTTTGCGAGATCCAA-CTTGCTTACCGAAAAGCGGAATAGGAAGAGGAAAGTGTAAG 1643
Query 253 GATGGTTACACAAAAGAGACCTTC-GGGCCTGATTCAGTTCGTGTACTTGTCGCAACACG 311
|||||||||||| |||||| | || || ||||||| |||||||| ||||| || |||||
Sbjct 1644 GATGGTTACACACAAGAGATC-TCTGGTTCTGATTCTGTTCGTGTTCTTGTTGCGACACG 1702
Query 312 AGCTAAACCGAGCA-AGAACTTCAACAGTGAACTGGATAGAGAGTTCTATGACGACTTT- 369
||||||||| | || | ||| |||| ||| |||| || ||||| ||||||| || |||
Sbjct 1703 AGCTAAACCCAACATA-AACATCAAAAGTAAACTTGACAGAGAATTCTATGTTGA-TTTC 1760
Query 370 TTGGAAGTTTTGAACAGGCCTGGAGAAACAGGGAGGTTTAACTTTTCAACTCAGTTTCTG 429
||||||||||||| || |||| |||||||||||| |||||||||||| |||||||||
Sbjct 1761 CTGGAAGTTTTGAATAGACCTGAAGAAACAGGGAGATTTAACTTTTCATCTCAGTTTCCA 1820
Query 430 TACTATAGAGAAGAATTGTTCATAGCAAATCTTAGTAACACACAGCTCGGAGGAAAGCCT 489
||||| | |||||||||||| | | || ||||||| || |||| | || |||||||||
Sbjct 1821 TACTACAAAGAAGAATTGTTTAGACCAGATCTTAGCAAAACAC-G-TC-CCGGAAAGCCT 1877
Query 490 GTTATTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCTATCTCCTTAAA 549
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1878 GTTGTTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCTACCTCCTCAAA 1937
Query 550 GTTCCAGTGGA-AATTATAGATTTGAAGGCGGTTATCGTGAGCCCAACTGGTTGGGCTAA 608
||||| ||||| || || ||||||||||| |||| ||||||||||| |||||||||||
Sbjct 1938 GTTCCGGTGGATAA-AATCGATTTGAAGGCTATTATTGTGAGCCCAACCGGTTGGGCTAA 1996
Query 609 TGCAGCGACAATTGATGTGGTCTACGATCTTTTTCATATGATGGGACGCGATGACATTCC 668
|||||| ||||| || |||||||| ||||| ||||||||||||| || || || |||||
Sbjct 1997 TGCAGCAACAATAGACGTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGATATTCC 2056
Query 669 GA-TCGGTC-TAGGAGATATGTTCGCCTTGAACCAATCTGAACCGGGTTTTCCATCTGCT 726
| | || | | ||||| ||||| || ||||||||||| || ||| ||||||| | | |
Sbjct 2057 -AGT-GGGCTTGGGAGACATGTTGGCATTGAACCAATCCGACCCGATTTTTCCACCGGTT 2114
Query 727 GGAGACTGCAAGTACGCCAAAGCGGTTCCCCAAGGCTGTGGTGGTTTTCTTGATTCCGAC 786
|||| |||||||||| ||| || |||| | ||||||||| || ||||| |||||||||
Sbjct 2115 GGAGGTTGCAAGTACGTCAAGGCTATTCCACGAGGCTGTGGCGGATTTCTGGATTCCGAC 2174
Query 787 ACTCTCTATGGTCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGAAACACTGCAGAGAAC 846
|||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 2175 ACTCTCTACGGTCTTGCTCGTGACCTTCCGAGAAGCCCTCGCAGATACACTGCAGAGAAT 2234
Query 847 TCAGTGGCAAATGGAGCTCCGAGGGACACTGATCGGACTGAAATCCGACAACCTCTGGC- 905
|||||| || |||||||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct 2235 TCAGTGACACATGGAGCTCCCAGGGACACTGATAGGCCTGAACTCCGACAACCTCTGGCT 2294
Query 906 ACTTGAAGTTTGGCAAAATCTGACCAAATCTGTTAATGAAGTGTCAAAGATCACTGTACT 965
| |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 2295 A-TTGAAGTTTGGCAAAATCTGACCAAATCTGGTAATGGAGTGTCTAAGATCACTGTACT 2353
Query 966 AACCAATGGACCG-T---TGAC-TAG-C----TTAGC-CA--AGAT------T-AT-CT- 1003
||||||||||||| | | || ||| | ||| | || |||| | || ||
Sbjct 2354 AACCAATGGACCGTTAACTAACTTAGCCAAGATTATCTCATCAGATAAAAAATCATCCTC 2413
Query 1004 -C--ATC-A-GAAGTTTACATCGTCGGTGGACATATAAGCCGTGAAAAATCTGACAAAGG 1058
| ||| | |||||||||||||| ||||||||||||| |||||| ||||| ||||||||
Sbjct 2414 ACTAATCAAGGAAGTTTACATCGTGGGTGGACATATAAACCGTGAGAAATCAGACAAAGG 2473
Query 1059 GAACGTATTCACAG-TTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTTGATCCTT 1117
|||| | ||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2474 GAACATTTTCAC-GATTCCTTCAAATGCATATGCTGAATTCAATATGTTTCTTGATCCTT 2532
Query 1118 TAGCAGCTAAGACCATTCTTGAATCAGGTCTAAACATCATACTCATCCCTCTAGCAACCC 1177
|||||||||||||| |||||||||| | ||||||||||| |||| ||||||||||||| |
Sbjct 2533 TAGCAGCTAAGACCGTTCTTGAATCCGCTCTAAACATCACACTCGTCCCTCTAGCAACAC 2592
Query 1178 AACGCAAGTT---TTCTTTTCAACCAATGCTTAATAAACTCTATTCCTCGGCGAAAACAC 1234
||| |||||| |||||| ||| |||||||| ||| ||||||||||||| |||||||||
Sbjct 2593 AACACAAGTTGAGTTCTTTCCAAACAATGCTTGATAGACTCTATTCCTCGACGAAAACAC 2652
Query 1235 CGGAAGCTCGGTTTGTGAAACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAATCACA 1294
| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 2653 CAGAAGCTCGGTTTGTGAAACGGTTGCTTGTAAGATTGCAAGCTCTTCATCAGAAACACA 2712
Query 1295 GGAGATACACGCACATAGACATGTTCTTAGGGGAAATTCTTGGAGCAGTT-TTCTTGGGA 1353
|||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||||
Sbjct 2713 GGAGATACACGCACATCGACATGTTCTTAGGGGAAGTTCTTGGAGCAGTTCTT-TTGGGA 2771
Query 1354 GGAGATCACGCTTCATTGAAGCCGAAACTGCGAGTTGAGCACATAAAAGTGATCGCTGAA 1413
|| ||| |||||||| ||||||||||| || ||| |||||||||||||||||||| |||
Sbjct 2772 GGCGATGACGCTTCACTGAAGCCGAAAATGAGAGCCGAGCACATAAAAGTGATCGCGGAA 2831
Query 1414 GGGGATGAATCAAAAGATGGTCAGATATTGATTGATAAACTGCATGGAAAACAAATAAAG 1473
||||||||||| | ||||||| |||||||||| |||||||||| || ||||||||||||
Sbjct 2832 GGGGATGAATCGAGAGATGGTAAGATATTGATCGATAAACTGCGCGGCAAACAAATAAAG 2891
Query 1474 ATACTCGAAAGAGTAGATCTCAGAGGC-TGCTATGAGAGTTTTGCTTCTAGACTCGATGA 1532
||||||||||||||||| || | | || | || |||||||||||||||||||||||||||
Sbjct 2892 ATACTCGAAAGAGTAGACCTAATAAGCAT-CTCTGAGAGTTTTGCTTCTAGACTCGATGA 2950
Query 1533 TAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAGG-GAAAGAAATGGAACACAC 1591
|||||||||||||||||| |||||||||||||||||||| ||| || ||||| |||||
Sbjct 2951 TAAGAAACAATCTGCAGTAATAGGAAGCTTTGAAGAACAAAAGAA-GATATGGAGCACAC 3009
Query 1592 CACCAAG 1598
|||||||
Sbjct 3010 CACCAAG 3016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5