BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326314
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19175.1 | Symbols: | Cysteine-rich protein | chr5:6449803-... 213 6e-55
> AT5G19175.1 | Symbols: | Cysteine-rich protein | chr5:6449803-6450245
REVERSE LENGTH=249
Length=249
Score = 213 bits (115), Expect = 6e-55
Identities = 211/256 (82%), Gaps = 11/256 (4%)
Strand=Plus/Plus
Query 1 ATGGGTATTGCAAAAAATTTGGTGATCTTTTTTCACATTGTCATCTTAGCAGTTTTGTTG 60
||||||| | | |||| |||| | ||||||||||| ||| |||| ||||||||||| | |
Sbjct 1 ATGGGTA-T-C-AAAACTTTGATTATCTTTTTTCATATTTTCATATTAGCAGTTTTATCG 57
Query 61 TCCAACGAA-ATCATTTTGGCCTCAGGTGCAGAGATCAAAAAATTCTCATATGATCATTG 119
|||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCCAAC-AATATCATTTTGACTTCAGGTGCAGAGATCAAAAAATTCTCATATGATCATTG 116
Query 120 CTACCATTTGTGTGAGGAC-GGAGGGTATGGATCACGTGAATGCTTT-GTAGACTGTACT 177
|| ||||| |||| || | || | || |||||| |||||| ||| || || ||| ||
Sbjct 117 CTTTCATTTATGTGTGG-CTGGCGAATACGGATCAAATGAATG-TTTCGTGGATTGTGCT 174
Query 178 GAAAAAGGATTCCGTACA-GGAGATTGTGCAAACCGAACTCCCAAAGATCCTATTAGATG 236
|||| ||||| | || ||||||||||||||||||||| |||||||||||| ||||
Sbjct 175 CAAAAGGGATTTTGG-CATGGAGATTGTGCAAACCGAACTGAAAAAGATCCTATTCGATG 233
Query 237 TTGTTGCAATAACTAA 252
|||||| ||||||||
Sbjct 234 TTGTTGTTATAACTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5