BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326316
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19170.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1260 0.0
> AT5G19170.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:6445245-6447419 FORWARD LENGTH=1290
Length=1290
Score = 1260 bits (682), Expect = 0.0
Identities = 1004/1154 (87%), Gaps = 43/1154 (4%)
Strand=Plus/Plus
Query 20 TGATGATGCTTCTTATCATGGGTCAGTTCTTCATTCAACTTGGAGTTTCAGTTATCCCAG 79
||| |||||| ||||||||||| || |||||| ||||| |||||||||||||| ||||
Sbjct 11 TGACGATGCTCCTTATCATGGGACA---CTTCATACAACTGGGAGTTTCAGTTATTCCAG 67
Query 80 TTTCTACTATTTACAGTCCTGATGGAGATGTGATTAATTGTATCAACC-GAGCGGATCAA 138
||||||| ||||| |||||||| || ||| ||||| |||||||| ||| || ||||||||
Sbjct 68 TTTCTACCATTTATAGTCCTGACGGCGATTTGATTGATTGTATCTACCGGA-CGGATCAA 126
Query 139 CCAGCATTCAATCACCCACTTC-TACAAAACCATATAATTCAGGAATATCCCACCGGCAT 197
| ||| ||| | ||||||| || ||| ||||||||| |||||||||||||| ||| |||
Sbjct 127 CGAGCCTTCGACCACCCAC-TCTTACGAAACCATATTATTCAGGAATATCCTACCAACAT 185
Query 198 GCCACAAATAG-AGAGAGACGTACAA-AAGAATTGGCAAATCTGGCACGAGACGGGAGAA 255
||||||||||| | | || ||||||| || ||||||||||| |||||||| || ||||||
Sbjct 186 GCCACAAATAGAAAAAAG-CGTACAAGAA-AATTGGCAAATTTGGCACGACACCGGAGAA 243
Query 256 AATTGTCCAGCGGGA-ACGATTCCCATACGTCGGGATTTGGATCCAAAAGTTCCTCA-C- 312
|| ||||| || || |||||||| || |||||||| ||| |||| |||| |||| |
Sbjct 244 AAGTGTCCGGC-AGAGACGATTCCTATGCGTCGGGAATTGAATCC---AGTTTCTCACCA 299
Query 313 AAA--A--A-G--CA-G--CC-AAAG-GTTCATGAGGTCACCAACAAAGCCACTAC-GGG 359
||| | | | || | || |||| | | |||||||| |||||| ||| ||| | |||
Sbjct 300 AAAGCAGCATGTACATGTTCCAAAAGAG-T-ATGAGGTCGCCAACAGAGCAACTTCAGGG 357
Query 360 ACACAAGTATGCTATTGCATATATGCA-AAACCGGCA-AAAAGTGTACGGTACAAGGGTA 417
||||||||||| |||||||| ||| | |||||| | ||| |||||||| ||||||| |
Sbjct 358 -CACAAGTATGCAATTGCATACATG-ATTAACCGG-ACAAATGTGTACGGAACAAGGGCA 414
Query 418 ACGTTAAATGTCTGGACACCAATTGTAGAATCGTCTTTCGATTTTAGCCTCGCACAAATT 477
||||| |||||||||||||||| ||||||||| ||| ||||||||||||||| || |||
Sbjct 415 ACGTTTAATGTCTGGACACCAAAGGTAGAATCGGCTTACGATTTTAGCCTCGCTCAGATT 474
Query 478 TGGTTGGCATCTGGGTCATACGAGACTGCGGATCTCAATACCGTAGAAGCTGGTTGGCAG 537
||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 475 TGGCTGGCATCTGGGTCATACGAGACTGCGGATCTCAATACTGTTGAAGCCGGTTGGCAG 534
Query 538 GTTTTTAGGTCAAGGTATAATGACAGTCA-GCCGCGATTGTTTACATATTGGACGGCGGA 596
|||| | |||| |||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 535 GTTTCTCGGTCGAGGTATAATGACAGCCAGGCC-AGATTGTTTACATATTGGACGGCGGA 593
Query 597 TGGATATAACAACACCGGGTGTTATGGCCTCGACCGTCCTGGATTTGTGCAGACTAGCAG 656
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 594 TGGATATAACAAGACCGGGTGTTATGGCCTCGACCTTCCTGGATTTGTGCAGACTAGCAG 653
Query 657 TACCATCGCCATCGGAGCTGCGATTGGTTGCACCTCAACATTTGGAGGCACCCCGTTTGA 716
||||||||||||||||||||| |||||| ||||||| |||| ||||||||||| ||||||
Sbjct 654 TACCATCGCCATCGGAGCTGCCATTGGTCGCACCTCGACATATGGAGGCACCCAGTTTGA 713
Query 717 CATGACGCTTCAGATCTGGAAGGATCCGTTTTCAGGACATTGGTGGCTGGCTCTAGGCCC 776
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 714 CATGACACTTCAGATCTGGAAGGATCTGTTTTCAGGACATTGGTGGCTGGCTCTGGGCCC 773
Query 777 CAATATAGTGCCGATAGGGTACTGGCCGGCCACAATTTTCACGACCTTATCCGATCATGC 836
||| ||||||| || || |||||||||||| |||||||||||||||||||||| ||||
Sbjct 774 AAATTTAGTGCCCATTGGATACTGGCCGGCCGTAATTTTCACGACCTTATCCGATTATGC 833
Query 837 GAAGACGGTTGAATGGGGAGGGGAAGTATTATACCGGAACCTCTCGGGCGTGAACACGGT 896
|| | | |||||||||||||| |||||||||||||| ||||| ||| ||||||| |||||
Sbjct 834 GACGGCAGTTGAATGGGGAGGCGAAGTATTATACCGAAACCTGTCGAGCGTGAATACGGT 893
Query 897 GGCCCAAATGGGTTCAGGGGAATATGCCGACAAAGGCTA-CGGAAATGCGGCATATTTCT 955
||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 894 GGCTCAAATGGGTTCAGGAGAATATGCCGACAAAGGCTATGGGAAA-GCGGCATATTTCT 952
Query 956 GCAATCTGAAGGTGGCAGAGAACAACCACACCCTTCTCCCGGTCCAAGATTTCGGCGTTC 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 953 GCAATCTGAAGGTGGCAGAGAACAACCACACCCTTCTCCCGGTTCAAGATTTCGGCGTTC 1012
Query 1016 GAGCCGATTACCCACAATATTATACCGTTAAGAAGTCATCCAACCGCAACTGCGGTAACC 1075
||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1013 AAGCCGATTATCCAGAATATTATACCGTTAAGAAGTCATCTAACCGGAACTGCGGAAACC 1072
Query 1076 ACTTTTATTTCGGCGGACCAGGGCCTCAACGTTCGGGAGCGGTTCGGGGAACAGTAGTTT 1135
| |||||||||||||||||||| ||||||||||| | ||| |||||||||||| ||||
Sbjct 1073 ATTTTTATTTCGGCGGACCAGGACCTCAACGTTCAGAAGCAGTTCGGGGAACAACGGTTT 1132
Query 1136 CTGCtttttg-ttt 1148
|| |||||| |||
Sbjct 1133 TTGGTTTTTGCTTT 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5