BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326319
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19200.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1554 0.0
> AT5G19200.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:6458953-6460856 FORWARD LENGTH=1204
Length=1204
Score = 1554 bits (841), Expect = 0.0
Identities = 946/997 (95%), Gaps = 5/997 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCAAtttcttctctcttccttttcttcatcctcttcctcgtttctctcctcatc 60
||||||||||||| ||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 43 ATGGCGGCAATTTTTTCTCTCTTCCTTTTCTTCATTCTCTTCATCGTCTCTCTTCTCATC 102
Query 61 atcttagctttcatcGTACGGCCAAGATCCGTCAAAATTCCCATCAAGTCCCGTCACGTC 120
|||||| ||||||||||||||||||||||||||| || |||||||||| || ||||||
Sbjct 103 ATCTTATCTTTCATCGTACGGCCAAGATCCGTCACGATCCCCATCAAGTTTCGCCACGTC 162
Query 121 TTCATCACCGGTGGATCAAGCGGAATCGGTCTCGCTCTCGCTCACCGTGCCGTCTCCGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TTCATCACCGGTGGATCAAGCGGAATCGGTCTCGCTCTCGCTCACCGTGCCGTCTCCGAA 222
Query 181 GGCGCTAAAGTCTCCATTCTCGCCCGATCAACTGAAAAGCTCGCCGAAGCCAAACGATCC 240
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 223 GGCGCTAAAGTCTCCATCCTCGCTCGTTCAACTGAAAAGCTCGCCGAAGCCAAACGATCC 282
Query 241 ATCCAGCTAGCTACCGGCGTCGAGGTCGCTACGTTCTCTGCCGATGTTCGCGATTACGAC 300
||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 283 ATCCAGCTAGCTACCGGTGTCGAGGTCGCCACGTTCTCTGCGGACGTTCGCGATTACGAC 342
Query 301 GCCGTTTCGAAGGCTG-TTGACGAATCGGGGCCGATCGATGTGTTGATTGTTAATCAAGG 359
||||||||||| || | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 343 GCCGTTTCGAAAGC-GATTGATGAATCGGGACCGATCGATGTGTTGATTGTTAATCAAGG 401
Query 360 CGTGTTTATTGGGAAAGAGCTTGAGAAACAGAGTCCCGAGGAGGTTAAGTTCATGATTGA 419
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 402 CGTGTTTATTGGGAAAGAGCTTGAGAAACAGAGTCCTGAGGAGGTTAAGTTTATGATTGA 461
Query 420 TGTGAATCTGGTTGGGAGCTTCAATGTGATTAAAGCGGCTTTGCCTGCTATGAAAGCTAG 479
|||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 462 TGTGAATCTGACTGGGAGCTTCAATGTGATTAAGGCGGCTTTACCTGCTATGAAAGCTAG 521
Query 480 GGAAGGTCGTGGTCCTGCTTCCATTTCTCTAGTGTCCTCTCAAGCTGGTCAGGCAGGTAT 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 522 GGAAGGTCGTGGTCCTGCTTCCATTTCTCTTGTGTCCTCTCAAGCTGGTCAGGCAGGTAT 581
Query 540 CTATGGTTACACTGCATATTCAGCGAGCAAGTTTGGGCTTCAGGGTTTAGCGCAAGCATT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATATGGTTACACTGCATATTCAGCGAGCAAGTTTGGGCTTCAGGGTTTAGCGCAAGCATT 641
Query 600 GCAGCAAGAAGTTATTTCTGATGACATTCATGTGACTCTCTTGTTTCCTCCTGACACTGA 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 642 GCAGCAAGAAGTTATTTCTGATGGCATTCATGTGACTCTCTTGTTTCCTCCTGACACTGA 701
Query 660 TACACCCGGGTTTGAAGATGAACTGAAGAAGAGGCCAGAGCTAACTTCAATCATAGCCGC 719
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TACACCCGGGTTTGAACAAGAACTGAAGAAGAGGCCAGAGCTAACTTCAATCATAGCCGC 761
Query 720 ATCGTCTGGCTCAATGAAAACCAATGAAGTAGCCAAGATATGTTTTGATGGAATCAAAGC 779
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 762 ATCATCTGGCTCAATGAAAACCAATGAAGTAGCCAAAATATGTTTTGATGGTATCAAAGC 821
Query 780 TGGAAAATTCACAGTGACATGCCATTTTATTGGCTTCTTACTATCAATTGCTAGCACCGG 839
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 AGGAAAATTCACAGTGACATGCCATTTTATTGGCTTCTTACTATCTATTGCTAGCACCGG 881
Query 840 CATGTCCCCTCAGGGATCGTTTTGGCTTGCTCTCATTGAAGTTATGTTCGGTGGTCTAAT 899
|||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||
Sbjct 882 CATGTCCCCTCAGGGATCTTTTTGGCTTGCACTCACTGAAGTTATGTTTGGTGGTCTAAT 941
Query 900 AAGACTCGTCAGCTTGGTTTTCCAATGGCAATGGTACAAAACCATAGAAAAGTGGAGT-a 958
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 942 AAGACTCGCCAGCTTGGTTTTCCAATGGCAATGGTACAAAACCATAGAAAAGTGGAGCCA 1001
Query 959 aa-aaa-aaaaaaCAAGTAAATAGTAAGTTAGATTAG 993
|| ||| |||||| |||||||||||||||||| ||||
Sbjct 1002 AAGAAATAAAAAAGAAGTAAATAGTAAGTTAGCTTAG 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5