BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326329
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19315.1 | Symbols: | Defensin-like (DEFL) family protein |... 364 2e-100
> AT5G19315.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:6504538-6504900 FORWARD LENGTH=243
Length=243
Score = 364 bits (197), Expect = 2e-100
Identities = 227/241 (94%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 1 ATGACCACCACCGTGAAAATCATGTTTTTTGCTATGCTAATTGTTCTTCTGTTCTCTATT 60
|||||||||||| ||||||| |||| ||||||||||||| |||||||| |||||||||||
Sbjct 1 ATGACCACCACCATGAAAATAATGTCTTTTGCTATGCTACTTGTTCTTTTGTTCTCTATT 60
Query 61 GATGTCGTTGAAGGATCCGGAAATTCGTTGTGCTGTAACACACATGCGAAATTTGGAGCT 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGTCGTTGAAGGATCCGGAAGTTCGTTGTGCTGTAACACACATGCGAAATTTGGAGCT 120
Query 121 TGCAAAACGTACCAAGACAGAAAGAGATGCAACAAATGGTGTCGTGATGGATGTGATAAT 180
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TGCAACACATACCAAGACAGAAAGAGATGCAACAAATGGTGTCTTGATGGATGTGATAAT 180
Query 181 AAGAAAGGCGGGTTTTGCAAACGTGTTGCTGGTGGAGCAAAA---TGCCATTGTTACTGT 237
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 181 AAGAAAGGCGGTTTTTGCAAACGTTTTGCTGGTGGAGCAAAAAAATGCCATTGTTACTGT 240
Query 238 T 238
|
Sbjct 241 T 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5