BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326334
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19360.1 | Symbols: CPK34 | calcium-dependent protein kinase... 2488 0.0
AT5G12180.1 | Symbols: CPK17 | calcium-dependent protein kinase... 1707 0.0
AT1G76040.2 | Symbols: CPK29 | calcium-dependent protein kinase... 93.5 6e-18
> AT5G19360.1 | Symbols: CPK34 | calcium-dependent protein kinase
34 | chr5:6521716-6523780 REVERSE LENGTH=1572
Length=1572
Score = 2488 bits (1347), Expect = 0.0
Identities = 1502/1578 (95%), Gaps = 6/1578 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTGTTGCTCTCATGGACGAGATTCAGGTAATAACAAAGAAGACCCGAGGCCC 60
|||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||
Sbjct 1 ATGGGAAATTGTTGCTCTCATGGAAGAGATTCAGATGATAACAAAGAAGAACCGAGGCCG 60
Query 61 GAAAATGGAGGAGGAGGCGGCGGTGCTGGTGCCGCTGAAGCCTCTGTGAGAGCTTCTAGA 120
|||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 61 GAAAAT------GGAGGCGGCGGTGTTGGTGCCGCTGAAGCCTCTGTTAGAGCTTCTAAA 114
Query 121 CACCCGCCAGCATCTCCTCCTCCTGCAACCAAACAAGGGCCAATTGGACCAGTCTTAGGG 180
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 115 CACCCGCCAGCATCTCCTCCTCCTGCAACCAAACAAGGACCAATAGGACCTGTCTTAGGG 174
Query 181 CGACCAATGGAAGATGTAAAAAGCTCATATACATTGGGTAAGGAGCTGGGTCGCGGACAG 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 175 CGACCAATGGAAGATGTAAAGAGCTCATATACATTGGGTAAGGAGCTAGGTCGTGGACAG 234
Query 241 TTTGGGGTGACCCATCTCTGCACCCAAAAGGCCACAGGGCTGCAATTCGCTTGCAAGACC 300
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 235 TTTGGGGTGACTCATCTCTGCACGCAAAAGGCCACGGGGCTGCAATTCGCTTGCAAGACC 294
Query 301 ATTGCTAAGAGGAAGCTGGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAG 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTGCTAAAAGGAAGCTCGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAG 354
Query 361 ATAATGCATCATTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGAT 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATTATGCATCACTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGAT 414
Query 421 AAGCATTCTGTGCATTTGGTTATGGAGCTTTGCGCAGGCGGAGAGTTGTTTGATAGGATC 480
||||||||||||||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 415 AAGCATTCTGTGCATTTGGTTATGGAGCTTTGCGCGGGAGGTGAGTTGTTCGACAGGATT 474
Query 481 ATTGCAAAGGGGCATTACTCTGAGAGAGCCGCGGCTTCGTTGCTACGGACGATTGTGCAG 540
|| |||||||| ||||| || |||||||| || || ||||| ||||||||||||||||||
Sbjct 475 ATCGCAAAGGGACATTATTCGGAGAGAGCTGCAGCCTCGTTACTACGGACGATTGTGCAG 534
Query 541 ATTATCCATACTTGCCATTCCATGGGGGTTATCCACAGGGATTTGAAGCCTGAGAACTTT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 535 ATTATCCATACTTGCCATTCCATGGGGGTTATCCACAGGGACTTGAAGCCTGAGAACTTT 594
Query 601 TTGTTGCTAAACAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTG 660
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGTTGCTTAGCAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTG 654
Query 661 TTCTACAAGCCAGGAGAGGTGTTCAAAGACATTGTAGGAAGTGCCTATTACATTGCACCA 720
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 655 TTCTACAAACCAGGAGAGGTGTTCAAAGACATTGTGGGAAGTGCTTATTACATTGCACCA 714
Query 721 GAGGTGTTGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATCGGTGTCATGTTG 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 GAGGTGTTGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATTGGTGTCATGTTG 774
Query 781 TATATCCTCTTGTGTGGTGTTCCACCTTTCTGGGCTGAGTCGGAGAATGGGATATTCAAC 840
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 775 TATATCCTCCTGTGTGGTGTTCCACCTTTTTGGGCTGAGTCAGAGAATGGGATTTTCAAT 834
Query 841 GCCATCCTAAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGTCATTTCACCACAG 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 GCCATCCTAAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGTCATCTCACCACAG 894
Query 901 GCAAAGGACCTCGTTAGGAAGATGCTCAACTCTGATCCCAAACAAAGATTAACCGCTGCT 960
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 GCAAAAGACCTCGTTAGGAAGATGCTCAACTCTGATCCAAAACAAAGATTAACCGCTGCT 954
Query 961 CAAGTTCTCAACCATCCATGGATCAAGGAAGATGGAGAAGCACCAGATGTTCCTCTTGAC 1020
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 955 CAAGTTCTCAATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATGTTCCTCTTGAC 1014
Query 1021 AATGCAGTGATGTCTAGGCTCAAGCAATTCAAAGCAATGAACAACTTTAAGAAAGTTGCT 1080
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1015 AATGCAGTGATGTCTAGGCTCAAGCAGTTCAAAGCAATGAACAACTTTAAGAAAGTTGCT 1074
Query 1081 TTACGGGTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAGGAGATGTTC 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 TTACGGGTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAAGAGATGTTC 1134
Query 1141 AAAGGAATGGACACCGACAACAGCGGAACCATAACTCTTGAAGAGCTAAGACAGGGACTT 1200
|||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1135 AAAGGAATGGACACTGACAACAGTGGAACCATAACTCTTGAGGAACTAAGACAGGGACTT 1194
Query 1201 GCCAAGCAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAATTAATGGAAGCTGCTGAT 1260
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1195 GCTAAGCAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAACTAATGGAAGCTGCTGAT 1254
Query 1261 GCAGACGGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAAC 1320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GCGGACGGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAAC 1314
Query 1321 AGGCTCGACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGC 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGGCTCGACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGT 1374
Query 1381 GGATATATCACAATGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGC 1440
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GGATATATCACAACGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGC 1434
Query 1441 AGAGACATTAAGGAAATCATTTCTGAGGTTGATGGAGACAACGATGGGAGGATAAACTAC 1500
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1435 AGAGACATTAAGGAAATCATTTCTGAGGTTGATGGAGACAATGATGGGCGGATAAACTAC 1494
Query 1501 GAGGAATTTGTGGCGATGATGAGAAAAGGTAACCCAGATCCTAACCCGAAGAAGCGGCGT 1560
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1495 GAGGAATTTGTGGCGATGATGAGAAAAGGAAACCCAGATCCTAATCCTAAGAAGCGGCGT 1554
Query 1561 GAACTGTCATTCAAATGA 1578
||||| ||||||||||||
Sbjct 1555 GAACTATCATTCAAATGA 1572
> AT5G12180.1 | Symbols: CPK17 | calcium-dependent protein kinase
17 | chr5:3937024-3939596 FORWARD LENGTH=1972
Length=1972
Score = 1707 bits (924), Expect = 0.0
Identities = 1281/1455 (88%), Gaps = 18/1455 (1%)
Strand=Plus/Plus
Query 133 TCTCCTCCTCCTGCAACCAAACAAGGGCCAATTGGACCAGTCTTAGGGCGACCAATGGAA 192
|||||||||||||||||||||||||| || || || || |||||||| ||||| ||||||
Sbjct 254 TCTCCTCCTCCTGCAACCAAACAAGGCCCTATAGGCCCTGTCTTAGGTCGACCCATGGAA 313
Query 193 GATGTAAAAAGC-TCATATACATT-GGGTAAGGAGCT-GGGTCGCGGACAGTTTGGGGTG 249
||||| |||||| |||||| | || ||| || ||||| ||| || || || ||||| ||
Sbjct 314 GATGT-AAAAGCTTCATATTCTTTAGGG-AAAGAGCTCGGG-CGAGGCCAATTTGGTGTC 370
Query 250 ACCCATCTCTGCACCCAAAAGGCCACAGGGC-TGCAATTCGCTTGCAAGACCATTGCTAA 308
|| || |||||||| || ||||| ||||| | | ||||| ||||||||||| ||||| ||
Sbjct 371 ACACACCTCTGCACACAGAAGGCAACAGGTCAT-CAATTTGCTTGCAAGACGATTGCAAA 429
Query 309 GAGGAAGCTGGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAGATAATGCA 368
|| ||||| || ||||| ||||||||||||||||| ||||| || ||||||||||||||
Sbjct 430 AAGAAAGCTTGTAAACAAGGAAGACATTGAGGATGTAAGAAGAGAAGTGCAGATAATGCA 489
Query 369 TCATTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGATAAGCATTC 428
||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 490 TCACTTGACTGGTCAACCAAACATTGTGGAGCTTAAAGGGGCTTATGAGGATAAGCATTC 549
Query 429 TGTGCATTTGGTTATGGAGCTTTGCGCAGGCGGAGAGTTGTTTGATAGGATCATTGC-AA 487
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 550 CGTGCATTTGGTTATGGAGCTTTGCGCAGGTGGAGAGTTGTTCGATAGGATTATTGCTAA 609
Query 488 AGGGGCATTACTCTGAGAGAGCCGCGGCTTCGTTGCTACGGACGATTGTGCAGATTATCC 547
| || |||||||| |||||||| || |||||||||||| | |||||||| |||||| | |
Sbjct 610 A-GGACATTACTCGGAGAGAGCAGCTGCTTCGTTGCTAAGAACGATTGTTCAGATTGTGC 668
Query 548 ATACTTGCCATTCCATGGGGGTTATCCACAGGGATTTGAAGCCTGAGAACTTTTTGTTGC 607
|||||||||||||||||||||| || ||||||||||||||||| ||||||||| | ||||
Sbjct 669 ATACTTGCCATTCCATGGGGGTGATTCACAGGGATTTGAAGCCAGAGAACTTTCTCTTGC 728
Query 608 TAAACAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTGTTCTACA 667
| ||||| ||||||||||||||||| ||||| || ||||| ||||| || || |||||||
Sbjct 729 TCAACAAAGATGAGAATTCTCCTCTCAAAGCTACTGACTTTGGGTTGTCGGTTTTCTACA 788
Query 668 AGCCAGGAGAGGTGTTCAAAGACATTGTAGGAAGTGCCTATTACATTGCACCAGAGGTGT 727
||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||| |
Sbjct 789 AGCCAGGAGAGGTATTCAAGGATATTGTGGGGAGTGCTTATTACATCGCACCTGAGGTTT 848
Query 728 TGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATCGGTGTCATGTTGTATATCC 787
||| || ||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 849 TGAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATGTTGTATATCC 908
Query 788 TCTTGTGTGGTGTTCCACCTTTCTGGGCTGAGTCGGAGAATGGGATATTCAACGCCATCC 847
|||| |||||||| || || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 909 TCTTATGTGGTGTCCCGCCATTCTGGGCTGAGTCGGAGAACGGGATATTCAACGCAATCC 968
Query 848 TAAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGT-CATTTCACCACAGGCAAAG 906
| || ||||| |||||||| ||||| |||||||||||| | ||| || || |||||||||
Sbjct 969 TTAGGGGACATGTTGATTTCTCAAGTGATCCATGGCCA-TCCATCTCGCCTCAGGCAAAG 1027
Query 907 GACCTCGTTAGGAAGATGCTCAACTCTGATCCCAAA-CAAAGATTAACCGCTGCTCAAGT 965
|| || |||| ||||||||||||||||||| ||||| |||||| |||| |||||||||||
Sbjct 1028 GATCTTGTTAAGAAGATGCTCAACTCTGAT-CCAAAGCAAAGACTAACTGCTGCTCAAGT 1086
Query 966 TCTCAACCATCCATGGATCAAGGAAGATGGAGAAGCACCAGATGTTCCTCTTGACAATGC 1025
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1087 TCTCAACCATCCATGGATCAAGGAGGATGGAGAGGCACCAGATGTTCCTCTTGATAATGC 1146
Query 1026 AGTGATGTCTAGGCTCAAGCAATTCAAAGCAATGAACAACTTT-AAGAAAGTTGCTTTAC 1084
|||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 1147 GGTGATGTCCAGGCTCAAACAATTCAAAGCAATGAACAA-TTTCAAGAAAGTTGCATTAC 1205
Query 1085 GGGTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAGGAGATGTTCAAAG 1144
|||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1206 GGGTGATAGCAGGCTGCTTATCAGAGGAAGAGATCATGGGGTTGAAGGAGATGTTTAAAG 1265
Query 1145 GAATGGACACCGACAACAGCGGAACCATAACTCTTGAAGAGCTAAGACAGGGACTTGCCA 1204
| ||||| || || | || ||||| || || || || ||| ||||||| |||||||| |
Sbjct 1266 GTATGGATACTGATAGTAGTGGAACAATTACACTCGAGGAGTTAAGACAAGGACTTGCTA 1325
Query 1205 AGCAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAATTAATGGAAGCTGCTGATGCAG 1264
|||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 1326 AGCAAGGTACAAGGTTGTCAGAATATGAAGTTCAGCAGTTAATGGAAGCTGCTGATGCTG 1385
Query 1265 ACGGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAACAGGC 1324
| ||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| |
Sbjct 1386 ATGGTAATGGAACAATAGACTATGGCGAGTTTATCGCAGCCACAATGCATATCAACAGAC 1445
Query 1325 TCGACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGCGGAT 1384
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1446 TTGACAGAGAAGAACATCTTTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGAT 1505
Query 1385 ATATCACAATGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGCAGAG 1444
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1506 ATATCACAATGGAAGAGCTAGAGCAAGCCCTACGGGAGTTTGGCATGAATGATGGCAGAG 1565
Query 1445 ACATTAAGGAAATCATTTCTGAGGTTGATGGAGACAACGATGGGAGGATAAACTACGAGG 1504
|||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| || |
Sbjct 1566 ACATTAAGGAGATCATTTCCGAGGTTGATGGAGACAATGATGGTCGGATAAACTATGATG 1625
Query 1505 AATTTGTGGCGATGATGAGAAAAGGTAACCCAGATCCTAA-CCCGAAGAAGCGGCGTGAA 1563
|||||||||| |||||||||||||| ||||| ||||| || ||| |||||||||||||||
Sbjct 1626 AATTTGTGGCAATGATGAGAAAAGGAAACCCGGATCC-AATCCCAAAGAAGCGGCGTGAA 1684
Query 1564 CTGTCATTCAAATGA 1578
|| ||||||||||||
Sbjct 1685 CTTTCATTCAAATGA 1699
> AT1G76040.2 | Symbols: CPK29 | calcium-dependent protein kinase
29 | chr1:28537673-28540637 FORWARD LENGTH=1945
Length=1945
Score = 93.5 bits (50), Expect = 6e-18
Identities = 143/186 (77%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 1361 ACTTTGACAAAGACA-ACAGCGGATATATCACAATGGAAGAGC-TAGAGCAAGCCCT-TC 1417
|||| |||||||||| | ||||| | |||||||| ||| |||| || | || || | |
Sbjct 1554 ACTTCGACAAAGACAGA-AGCGGTTTTATCACAAGGGACGAGCTTA-AACACTCCATGAC 1611
Query 1418 GGGAGTTTGGCATGAACGATGGCA-GAGA-CATTA-AGGAAATCATTTCTGAGGTTGATG 1474
|||| ||||||| ||| | | | || || || | ||| | || ||| ||||||
Sbjct 1612 -TGAGTATGGCATGGGTGAT-G-ATGCGACCA-TAGATGAAGTTATCAATGATGTTGATA 1667
Query 1475 GAGACAACGATGGGAGGATAAACTACGAGGAATTTGTGGCGATGATGAGAAAAGGTAACC 1534
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1668 CCGACAATGATGGGAGGATAAACTACGAGGAATTTGTGGCGATGATGAGGAAAGG-AACT 1726
Query 1535 -CAGAT 1539
|||||
Sbjct 1727 ACAGAT 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5