BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326378
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19830.1 | Symbols: | Peptidyl-tRNA hydrolase family protei... 972 0.0
> AT5G19830.1 | Symbols: | Peptidyl-tRNA hydrolase family protein
| chr5:6703150-6705249 FORWARD LENGTH=1017
Length=1017
Score = 972 bits (526), Expect = 0.0
Identities = 619/663 (93%), Gaps = 9/663 (1%)
Strand=Plus/Plus
Query 1 ATGCTGAGTATGTTGTCAAGGCGTTGCTATTGCA---CTTCTGTTCATCGGCCATGGCTG 57
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 234 ATGCTGAGTAGGTTGTCAAGGCGTTGCTACTGCACTTCTTCTGTTCATCGGCCATGGCTG 293
Query 58 TTTTTGGGATTGGGCAATCCAGGGGACAAATACAAAGGGACTAGACACAACATTGGGTTC 117
||| | ||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 294 TTTCTAGGACTGGGCAATCCAGGTGACAAATACAAAGGAACTAGACACAACATTGGATTC 353
Query 118 GAAATGATTGATGTTTTTGCTGAGTCAGTGGGTATTCAGATGAACCTGGTAAATTTCAAG 177
||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 354 GAAATGATTGATGTTTTCGCTGAGTCAGTGGGGATTCAAATGAACTTGGTAAATTTCAAG 413
Query 178 GCTATAATGGGACAAGGTTTCGTGG-ATGATC-TCCCTGTTATCCTGGCAAAGCCGCAAA 235
||||||||||||||||||||||||| | |||| |||| || ||||| ||||| |||||||
Sbjct 414 GCTATAATGGGACAAGGTTTCGTGGCA-GATCTTCCC-GTCATCCTTGCAAAACCGCAAA 471
Query 236 CTTACATGAACTTGAGCGGTGAATCAAGTGGACCTCTTGCGGCTTATTACAAGTTACCTC 295
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 472 CCTACATGAACTTGAGCGGTGAATCAAGTGGACCTCTCGCAGCTTATTACAAGTTACCTC 531
Query 296 TCAATCGTGTGCTTGTGGTGCATGATGACATGCAATTGCCGTGTGGTGTTCTTCGTCTTC 355
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 532 TCAATCGTGTGCTTGTGGTTCATGATGACATGCAATTGCCATGTGGTGTTCTTCGTCTTC 591
Query 356 AAGAAAAAGGAGGCCATGGATGTCACAACGGGTTAAAAAGTGTAATGAACCATTTCCGAG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAGAAAAAGGAGGCCATGGATGTCACAACGGGTTAAAAAGTGTAATGAACCATTTCCGAG 651
Query 416 GCAACAGGGAATTTGCAAGGCTACGAATCGGAATTGGAAATCCTCCAGGACAAATGGACC 475
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 652 GCAACAGGGAATTTGCAAGGCTACGAATCGGAATTGGAAAGCCTCCGGGACAAATGGACC 711
Query 476 CAAAGGCATTCTTATTGCAGAAGTTTAGCATGCCAGCTCGTGAACGAATGGATAAAGCTT 535
||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 712 CAAAGGCGTTCTTGTTGCAGAAGTTCAGCATGCCAGCTCGTGAACGGATGGATAAAGCTT 771
Query 536 TAGCGGAAGGAGTGGACGCTCTGAAGCTGGTCTTGTCTAAAGACTTTGGAGAAAGCTGGA 595
|||| ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 772 TAGCAGAAGGGGTGGATGCTCTGAAGCTCGTCTTGGCTAAAGACTTTGGAGAAAGCTGGA 831
Query 596 GAGTGTTCAATGTTGAACAGAAGTACAAACACTTAAGACAACACACAATAAT-TGCAGCT 654
|| |||||||||| |||||||||||||||||||||| ||||||||||||| | | |||||
Sbjct 832 GATTGTTCAATGTGGAACAGAAGTACAAACACTTAAAACAACACACAATACTAT-CAGCT 890
Query 655 TGA 657
|||
Sbjct 891 TGA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5