BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326382

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19860.1 | Symbols:  | Protein of unknown function, DUF538 |...   865    0.0  


> AT5G19860.1 | Symbols:  | Protein of unknown function, DUF538 
| chr5:6714264-6715875 REVERSE LENGTH=853
Length=853

 Score =  865 bits (468),  Expect = 0.0
 Identities = 520/546 (95%), Gaps = 0/546 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCCTTTATCGTTTCTTCATCTCAATCGTCTTCTTCTCTCTGACCCTCTTCACTACG  60
            ||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||
Sbjct  39   ATGGCCCTTTATCCTTTCTTCATCTCAATCTTCATCTTCTCTTTGACCCTCTTCACTACG  98

Query  61   ACGACCCATTCCCTCTACGAACCCGACCCGGATTCGATTTCCACCGTTTACGAACTCCTC  120
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  99   ACGACCCATTCCCTCAACGAACCCGACCCGGATTCGATTTCCACCGTTTACGAACTCCTC  158

Query  121  CCAAAGTACGGTCTCCCAAGCGGTCTCTTACCGGACTCCGTCACCGATTTCACCCTCTCC  180
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  159  CCAAAGTACGGTCTCCCAAGCGGTCTCTTACCGGACACCGTCACCGATTTCACCCTCTCC  218

Query  181  GACGATGGCCGATTCGTTGTTCACTTGCCCAGTTCCTGCGAAATTGAATTTGACTACCTC  240
            ||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||
Sbjct  219  GACGATGGCCGATTCGTCGTTCACTTGCCCAATTCCTGTGAGATTGAATTTGACTACCTC  278

Query  241  GTTCACTACGACAAGACTATATCTGGCCGTATCGGTTACGGCTCAATCACCGAGCTCAAG  300
            ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct  279  GTTCACTACGATAAGACCATATCTGGTCGTATCGGTTACGGTTCAATCACCGAGCTCAAG  338

Query  301  GGTATTCAGGTGAAGAAATTCTTTATTTGGCTCGATGTCGATGAAATCAAGGTCGATCTT  360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  339  GGTATTCAGGTGAAGAAATTCTTTATTTGGCTCGATGTCGATGAGATCAAGGTCGATCTT  398

Query  361  CCGCCGTCTGATTCCATCTACTTCAAAGTTGGGTTTATCAATAAGAAGCTTGATATTGAC  420
            || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  399  CCACCTTCTGATTCAATCTACTTCAAAGTTGGCTTTATCAATAAGAAGCTTGATATTGAC  458

Query  421  CAGTTTAAGACTATACATTCGTGCCACGACAATGGCGTCTCTGGTTCTTGTGGTGATTCA  480
            |||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||
Sbjct  459  CAGTTTAAGACTATACATTCTTGTCACGATAATGGTGTCTCTGGCTCTTGTGGAGATTCA  518

Query  481  TGGAAGAGTTTTCTCGAGAAAGGGAAAGGAATGATGGATGAAGCGGAAATGTTAATCACC  540
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  519  TGGAAGAGTTTTCTCGAGAAAGGGCAAGGAATGATGGATGAAGCGGAAATGTTAATCACC  578

Query  541  GAGTAA  546
            ||||||
Sbjct  579  GAGTAA  584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5