BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326421
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20260.1 | Symbols: | Exostosin family protein | chr5:68368... 1808 0.0
AT5G20270.1 | Symbols: HHP1 | heptahelical transmembrane protei... 1325 0.0
AT5G11130.1 | Symbols: | Exostosin family protein | chr5:35423... 113 6e-24
AT3G42180.1 | Symbols: | Exostosin family protein | chr3:14324... 110 7e-23
> AT5G20260.1 | Symbols: | Exostosin family protein | chr5:6836806-6839532
REVERSE LENGTH=1377
Length=1377
Score = 1808 bits (979), Expect = 0.0
Identities = 1107/1170 (95%), Gaps = 4/1170 (0%)
Strand=Plus/Plus
Query 793 AAAGAAAAGAAGAGAAACAGAATCGAGGAAGGTTTAGCAAAATCGAGAGCTGCCATACGT 852
|||| ||| ||||| |||| ||| |||||||||||||||||||| ||| | |||||||||
Sbjct 208 AAAGGAAATAAGAGGAACATAATTGAGGAAGGTTTAGCAAAATCAAGATCCGCCATACGT 267
Query 853 GAAGCCGTGAGGCTGAAGAAGTTTGCATCGGACAAGGAGGAAA-CTTCTGTTCCTCGTGG 911
|||||||||||| |||||||||||| ||||||||| || |||| ||| ||||||||| ||
Sbjct 268 GAAGCCGTGAGGTTGAAGAAGTTTGTATCGGACAAAGAAGAAACCTT-TGTTCCTCGAGG 326
Query 912 AGCTGTTTACAGAAACGCTTTTGCATTTCATCAAAGCCATATGGAGATGGAGAAGAAATT 971
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 327 AGCCGTTTACAGAAACGCTTTTGCATTTCATCAAAGCCATATAGAGATGGAGAAGAAATT 386
Query 972 CAAAGTGTGGGTGTACAGAGAAGGAGACACACCGTTAGTTCACATGGGTCCAGTGAACAA 1031
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 387 CAAAGTGTGGGTGTACAGAGAAGGAGAGACACCGTTAGTTCACATGGGTCCAATGAACAA 446
Query 1032 CATATACAGCATTGAAGGCCAATTCATGGACGAGATCGAGACAGGGATGAGCCCATTCGC 1091
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 447 CATATACAGCATTGAAGGCCAATTCATGGACGAGATCGAGACAGGGATGAGCCCGTTCGC 506
Query 1092 TGCTAGCGGCCCCGAGGAGGCTCATGCCTTTCTCCTCCCTGTCAGCATCGCCAACGTCGT 1151
|||| | |||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 507 GGCTAACAACCCCGAAGAGGCTCATGCCTTTCTCCTCCCTGTCAGCGTCGCCAACATCGT 566
Query 1152 TCATTACTTATACAGGCCGCTCGTGACCTACTCGAGGGAACAACTTCACAAAGTTTTTCT 1211
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TCATTACCTATACCGGCCGCTCGTGACCTACTCGAGGGAACAACTTCACAAAGTTTTTCT 626
Query 1212 TGACTACGTCAATGTTGTGGCTCACAAATATCCTTATTGGAACCGAAGCCTTGGAGCCGA 1271
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 627 TGACTACGTCGATGTTGTGGCTCACAAGTATCCTTATTGGAACAGAAGCCTTGGAGCCGA 686
Query 1272 CCATTTCTTTGTTTCTTGCCATGATTGGGCACCAGACGTCTCAGGATCTAACCCGGAGAT 1331
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 687 CCATTTCTACGTTTCTTGCCATGATTGGGCACCAGACGTCTCAGGATCGAACCCGGAGCT 746
Query 1332 GATGAAAAACCTGATAAGAGTTCTCTGCAACGCCAACACATCGGAAGGTTTCATGCCCCA 1391
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 747 GATGAAAAACCTGATAAGAGTTCTCTGCAACGCCAACACATCAGAAGGTTTCATGCCCCA 806
Query 1392 ACGAGATGTCTCAATCCCGGAGATCAACATCCCCAGAGGCCAACTGGGACCACCTCAATT 1451
|||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 807 ACGAGACGTCTCAATCCCGGAGATCAACATCCCCGGAGGCCACCTGGGACCACCTCGGTT 866
Query 1452 ATCCCGCTCTTCTGGCCATGACCGACCCATCCTTGCTTTCTTCTCAGGGGGCTCACACGG 1511
||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 867 ATCGCGCTCTTCGGGCCATGACCGACCCATCCTTGCTTTCTTCGCAGGGGGTTCACACGG 926
Query 1512 TTATATCCGCAAAATTCTACTGCAGCACTGGAAAGACAAAGATGAGGAGGTCCAAGTCCA 1571
||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 927 TTATATCCGCAGAATTCTATTGCAGCATTGGAAAGACAAAGATGAGGAGGTCCAAGTCCA 986
Query 1572 CGAGTACTTAACCAACAACAAAGACTACTTCAAGCTCATGGCTACGGCAAGGTTCTGTCT 1631
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CGAGTACTTAGCCAAAAACAAAGACTACTTCAAGCTCATGGCTACGGCAAGGTTCTGTCT 1046
Query 1632 CTGTCCCAGTGGCTATGAAGTGGCTAGCCCTCGAGTCGTTGCAGCCATTAACCTAGGTTG 1691
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1047 CTGTCCTAGTGGCTACGAAGTGGCTAGCCCTCGAGTCGTTGCAGCCATTAACTTAGGTTG 1106
Query 1692 CGTCCCTGTCATCATCTCTGATCACTACGCCTTGCCCTTCTCAGACGTTCTTGATTGGAC 1751
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1107 CGTCCCTGTCATCATCTCTGATCACTACGCCTTGCCTTTCTCAGACGTTCTTGATTGGAC 1166
Query 1752 TAAGTTCACCATTCATGTTCCCTCTGAA-AAGATCCCTGAGATCAAAACTATACTAAAGA 1810
||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||
Sbjct 1167 TAAGTTCACCATTCATGTTCCTTCT-AAGAAGATCCCTGAGATCAAAACCATACTAAAGA 1225
Query 1811 GCATATCCTGGAGACGCTACAAGGTGTTGCAGAGAAGGGTTTTGCAGGTCCAGAGACATT 1870
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GCATATCCTGGAGACGCTACAGGGTGTTGCAGAGAAGGGTTTTGCAGGTCCAGAGACATT 1285
Query 1871 TTGTGATCAACAGACCGTCGCAACCGTTTGATATGCTTCGAATGCTTCTTCACTCTGTTT 1930
| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1286 TCGTGATCAACAGACCGTCACAACCGTTTGATATGCTTAGAATGCTTCTTCACTCTGTTT 1345
Query 1931 GGTTGAGAAGACTAAACCTGAGGTTGCCTT 1960
||||||||||||||||||||||||||||||
Sbjct 1346 GGTTGAGAAGACTAAACCTGAGGTTGCCTT 1375
> AT5G20270.1 | Symbols: HHP1 | heptahelical transmembrane protein1
| chr5:6840833-6842858 REVERSE LENGTH=1393
Length=1393
Score = 1325 bits (717), Expect = 0.0
Identities = 767/792 (97%), Gaps = 0/792 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGATAACGAATACATATTGAATTATTACAGAGCTGATTGGTCCATTAGAGATGCT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 ATGAAAGACAACGAATACATATTGAATTATTACAGAGCTGATTGGTCCATTAGAGATGCT 457
Query 61 TTCTTCAGCGTCTTTAGTTTCCACAATGAGTCTCTCAACGTTTGGACACATTTAATTGGT 120
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 458 TTCTTCAGCGTATTTAGTTTCCACAATGAGTCCCTCAATGTTTGGACACATTTGATTGGT 517
Query 121 TTTATCTTATTTGTGGCACTAACCGTCGCCAACATTATTCATCACGATGGATTCTTCCCC 180
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 518 TTTATCTTCTTTGTGGCACTAACCGTCGCCAATATTATTCATCACGACGGATTCTTCCCC 577
Query 181 GTGGATGCAAAGAGTCCAGGGAATGTAACAAGATGGCCATTCTTCGTTTTCTTAGGAGGC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 578 GTGGATGCAAAGAGTCCAGGGAATGTAACAAGATGGCCCTTCTTCGTTTTCTTAGGAGGC 637
Query 241 TCAATGTTCTGCCTACTCGCAAGCAGCATTTGCCACCTCTTCTGTTGCCACTCAAAAGAC 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 638 TCAATGTTCTGCCTACTCGCAAGCAGCATTTGTCACCTCTTCTGTTGCCACTCAAAAGAG 697
Query 301 CTTAATGTCTTCCTTCTCCGCATAGACTATGCCGGTATCACCGCCATGATCATCACTTCC 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 698 CTTAATGTCTTCCTTCTCCGAATAGACTATGCCGGTATCACCGCCATGATCATCACTTCC 757
Query 361 TTCTTTCCACCAATCTTCTACATCTTCCAATGCACTCCTAGGTGGTACTTCATCTACCTC 420
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 758 TTCTTCCCACCAATCTTCTACATCTTCCAGTGCACTCCTCGGTGGTACTTCATCTACCTC 817
Query 421 GCAGGCATCACTTCCATGGGAATCTTCACAATCATCACACTTTTCACCCCATCACTTTCC 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GCAGGCATCACATCCATGGGAATCTTCACAATCATCACACTTTTCACCCCATCACTTTCC 877
Query 481 GCTCCCAAGTACCGAGCTTTCCGCGCATTGCTCTTCGCCTCCATGGGGCTCTTTGGGATT 540
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 878 GCTCCCAAGTACCGAGCTTTCCGCGCTTTGCTCTTTGCCTCCATGGGGCTGTTTGGGATT 937
Query 541 GTCCCAGCTGTCCACGCGCTAGTGGTCAACTGGGGAAACCCGCAAAGGAACGTGACACTC 600
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 938 GTCCCAGCTGCCCACGCGCTAGTGGTCAATTGGGGAAACCCGCAAAGGAACGTGACGCTC 997
Query 601 GTGTACGAGTTGCTTATGGCAGTGTTCTATCTTGTTGGAACAGGATTTTATGTAGGGAGA 660
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 998 GTGTACGAGTTGCTTATGGCAGTGTTCTATCTTGTTGGAACAGGATTCTACGTAGGGAGA 1057
Query 661 GTGCCCGAAAGGCTTAAACCGGGATGGTTTGATCGTGTGGGACATAGTCATCAGATCTTC 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 GTGCCAGAAAGGCTTAAACCGGGATGGTTTGATCGTGTGGGACATAGTCATCAGATCTTC 1117
Query 721 CATGTGTTCGTTTTGTTGGGTGCTTTGTCTCACTATGCAGCTGCTCTCTTGTTCTTGGAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 CATGTGTTCGTTTTGTTGGGTGCTTTGTCTCACTATGCAGCTGCTCTCTTGTTCTTGGAC 1177
Query 781 TGGCGTGACCAC 792
||||||||||||
Sbjct 1178 TGGCGTGACCAC 1189
> AT5G11130.1 | Symbols: | Exostosin family protein | chr5:3542320-3544724
FORWARD LENGTH=1443
Length=1443
Score = 113 bits (61), Expect = 6e-24
Identities = 122/150 (81%), Gaps = 10/150 (7%)
Strand=Plus/Plus
Query 928 GCTTTTGCATTTCATCAAAGCCATATGGAGATGGAGAAGAAATTCAAAG-TGTGGGTGTA 986
|||||| | |||||||| || || | ||||||||||||| |||| ||| | ||| ||
Sbjct 403 GCTTTTACTTTTCATCAGAGTCACAAAGAGATGGAGAAGAGATTC-AAGATATGGACATA 461
Query 987 CAGAGAAGGAGACA-CACCGT-TAG-TTCACATGGGTCCAGTGAACAACATATACAG-CA 1042
||||||||||| | | || | | | |||||| ||||||| | |||||||| ||| | ||
Sbjct 462 TAGAGAAGGAGA-AGCTCC-TCT-GTTTCACAAGGGTCCACTCAACAACATTTAC-GCCA 517
Query 1043 TTGAAGGCCAATTCATGGACGAGATCGAGA 1072
||||||||||||||||||||||||||||||
Sbjct 518 TTGAAGGCCAATTCATGGACGAGATCGAGA 547
> AT3G42180.1 | Symbols: | Exostosin family protein | chr3:14324274-14328676
REVERSE LENGTH=1471
Length=1471
Score = 110 bits (59), Expect = 7e-23
Identities = 153/198 (77%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 1228 GTGGCTCACAAATATCCTTATTGGAACCGAAGCCTTGGAGCCGACCATTTCTTTGTTTCT 1287
||||||||||| | |||| |||||||| |||| ||| || ||||||||| | || |||
Sbjct 711 GTGGCTCACAAGCACCCTTTTTGGAACCAAAGCAATGGTGCTGACCATTTCATGGTCTCT 770
Query 1288 TGCCATGATTGGGCACCAGACGT-CTCAGGAT-CTAACCCGGAGATGATGAAAAACCTGA 1345
||||| |||||||| || || || | || ||| ||| || ||| | | || ||| | |
Sbjct 771 TGCCACGATTGGGCTCCCGATGTGC-CA-GATAGTAAACCAGAGTTTTTCAAGAACTTCA 828
Query 1346 TAAGAGTTCTCTGCAACGCCAACACATCGGAAGGTTTCATGCCCCAACGA--GATGTCTC 1403
| |||| || |||||||||||||||||||||||||||| | | ||| | ||| ||||
Sbjct 829 TGAGAGGACTATGCAACGCCAACACATCGGAAGGTTTCA-GACGAAAC-ATCGATTTCTC 886
Query 1404 AATCCCGGAGATCAACAT 1421
|| |||||||| |||||
Sbjct 887 TATACCGGAGATTAACAT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5