BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326432
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20390.1 | Symbols: | Glycosyl hydrolase superfamily protei... 568 4e-161
> AT5G20390.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr5:6892831-6894195 REVERSE LENGTH=1270
Length=1270
Score = 568 bits (307), Expect = 4e-161
Identities = 469/544 (86%), Gaps = 23/544 (4%)
Strand=Plus/Plus
Query 1 ATGGATTGTCCTA-AAAAATCATTCTTGTTGATGATCTCGTGCATGTCATTTCTGTTAAA 59
|||||||||| || ||| | | |||||||||| | | | |||| || |||||||||||||
Sbjct 85 ATGGATTGTCATAGAAAGA-CGTTCTTGTTGAAGTTTTTGTGCGTGGCATTTCTGTTAAA 143
Query 60 TTATAACAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCTCCT 119
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CTACAGCAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCTCCT 203
Query 120 TGGAGACAACCTCCCACCTCCTTCTGAAGTTATCAACCTCTACAAGTCATTAAGTGTTAC 179
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 204 TGGAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTCCTTAAGTGTTAC 263
Query 180 CAATATTCGGATTTTCGACACGAA-TACGGATGTCCTTAACGC-TTTCCGAGGGAACCTC 237
|||||||||||| |||||||| || |||||||||||||||||| |||| ||||||| | |
Sbjct 264 CAATATTCGGATCTTCGACAC-AACTACGGATGTCCTTAACGCCTTTC-GAGGGAATCGC 321
Query 238 GATATTGGAGTTATGGTAGGTGTTAAGAACCAAGACTTACAAGCTCTCTCGGTAAACGAA 297
|||| ||||||||||||| || ||||||||||||||| | ||||| ||||| | ||||
Sbjct 322 AATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAA 381
Query 298 GACGCTGT-AA-AC----------ACCAACGTTGAGCCTTACTTAGCTGACGTCAAAATT 345
|| ||||| || || |||||| ||||||||||||||||||| ||||| ||
Sbjct 382 GAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACATC 441
Query 346 ACATTCATTACTGTTGGTAATGAAATCATCC-ATGGAGAAATCGGATCTTACGTGCTACC 404
|| |||||| |||| || || ||| |||||| | || |||||||| ||||| ||||||||
Sbjct 442 ACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGG-GAAATCGGCTCTTATGTGCTACC 500
Query 405 TGTCATGCAATCTCTCACCAACGTTGTCAAGTCGAAGAGTCTCCCAATCTTGATCAGCAC 464
|||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 501 CGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGCAC 560
Query 465 CACTGTGGCTAATGG--AATCTTGGCCAGTCATATCCACCTTCCGCCGGAGATTTCACGC 522
||| ||||||| || || ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 561 CACGGTGGCTA-TGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCATGC 619
Query 523 CTCA 526
||||
Sbjct 620 CTCA 623
Score = 231 bits (125), Expect = 6e-60
Identities = 170/191 (89%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 652 GGATGGCCATCTGCTGGTAAC-GAGAACTTAAAAACGCCAGATATCGCGTCTATATACAA 710
||||||||||||||||||||| || ||||||| || ||||||||||| |||||||||||
Sbjct 886 GGATGGCCATCTGCTGGTAACGGA-AACTTAACGACTCCAGATATCGCATCTATATACAA 944
Query 711 CGGAAATTTTGTTAAACATGTGGAAAGCGGTAA-GGGAACGCCCAAA-AGACCAAACAGT 768
||||||||||||||||||||||||||||| |||| |||| ||| |||||||| |||
Sbjct 945 TACCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGA-CGCC-AAAGAGACCAAAGAGT 1002
Query 769 GGCATTAATGGATTTCTATTTGCTACGTTCAATGAGAATCAAAAGCCAGTTGGAACAGaa 828
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 1003 GGCATTAGTGGATTTCTATTTGCGACGTTCAATGAGAATCAAAAGCCAGCGGGAACCGAA 1062
Query 829 aaaaaTTTTGG 839
||||||||||
Sbjct 1063 CAAAATTTTGG 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5