BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326467
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20860.1 | Symbols: | Plant invertase/pectin methylesterase... 1197 0.0
> AT5G20860.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:7076890-7079077 REVERSE LENGTH=1539
Length=1539
Score = 1197 bits (648), Expect = 0.0
Identities = 734/776 (95%), Gaps = 4/776 (1%)
Strand=Plus/Plus
Query 799 GGCAAAGACGAGACGGTGATTGTTGGCGATGATAGTGCCACCGGAGGAACTTCTGTCCCG 858
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GGCAAAGACCTGACGGTGATTGTTGGCGATGATAGTGCCACCGGAGGAACTTCTGTCCCG 819
Query 859 GACACCGCTACAATGACGGTTACGGGTGACGGATTCATCGCACGAGATATCGGAATCAAG 918
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 820 GACACCGCTACAATGACGGTTACGGGTGACGGATTCATTGCACGTGATATCGGAATCAAG 879
Query 919 AACACT-GCAGGACCTGGAGGACATCAAGCCATAGCATTAAGTATCACATCAGACCAATC 977
|||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 880 AACA-TAGCAGGGCCTAGAGGACATCAAGCCATAGCATTAAGCATCACATCAGACCAATC 938
Query 978 AGTGTTATACCGATGTAGCATCTCTGGTTATCAAGACACACTTTACGCAGCTGCCTTGCG 1037
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 939 AGTGTTATACCGATGTAGCATCTCCGGTTATCAAGACACACTTTACGCAGCTGCCTTGCG 998
Query 1038 TCAGTTCTATAGAGAATGTGATATATATGGAACAATAGATTTCATATTTGGAAACGCAGC 1097
||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 999 TCAGTTCTATAGAGAATGTGACATTTATGGAACTATAGATTTCATATTCGGAAACGCAGC 1058
Query 1098 TGCGGTTTTTCAAAGCTGCAACATATTCTTGCGTCGCCCTCATGGTGTCAAGGCCTATAA 1157
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGCTGTTTTCCAAAGCTGCAACATATTCTTGCGTCGCCCTCATGGTGTCAAGGCCTATAA 1118
Query 1158 CGTTATTCTCGCTAACGGGAGGACGGACCAACTTCAGAATACCGGATTTGCACTTCATAG 1217
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1119 TGTTATTCTTGCTAACGGGAGGACGGACCAACGTCAAAATACCGGATTTGCACTTCATAG 1178
Query 1218 TTGTAGGATCCGGACGGATTCAGATCTTTCGCCGGTGAAACATATGTATAGCTCTTACTT 1277
|||||||||| |||| || |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1179 TTGTAGGATCAGGACAGACTCAGATCTTTCGCCCGTGAAACATAAGTATAGCTCTTACTT 1238
Query 1278 AGGACGGCCGTGGAGAAAGTATTCGAGGTCTATAGTGATGGAATCGTATATTGACGACGC 1337
|||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1239 AGGACGCCCGTGGAGAAAGTATTCGAGGGCTATAGTGATGGAATCATATATTGACGACGC 1298
Query 1338 GATAGCGGAGGAAGGATGGGCCGGGTGGTTAGACTCCGGAGACGAAGTACTAAAGACATT 1397
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1299 GATCGCGGAGGGAGGATGGGCCGGGTGGTTAGACTCCGGAGACGAAGTACTAAAGACGTT 1358
Query 1398 GTATTTTGGAGAGTTTAAGAATTATGGTCCTAAAGCTAGAGTTTCCAAGAGAGTGACGTG 1457
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1359 GTATTTTGGAGAGTTCAAGAATTATGGTCCTAAAGCTAGAATTTCCAAGAGAGTGACGTG 1418
Query 1458 GGAAGGGTTTCACTT-GATTGGGTTTGAAGACGCAAGTTATTTTAGCGTTGTAAAGAAAA 1516
|||||||||||| || ||||||||||||||| |||| |||||||||||| ||||||| ||
Sbjct 1419 GGAAGGGTTTCA-TTCGATTGGGTTTGAAGAAGCAAATTATTTTAGCGTCGTAAAGAGAA 1477
Query 1517 GAAAAGGAGAAGACGTCACTAATGCTTTTAAGTATAAGATTAAGATTAAGATACAA 1572
|||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1478 GAAATGGAGAAGACGTCACTAATGGTTTTAAGTATAAGTTTAAGATTAAGATACAA 1533
Score = 1127 bits (610), Expect = 0.0
Identities = 714/765 (93%), Gaps = 4/765 (1%)
Strand=Plus/Plus
Query 1 ATGGGTATTATAGATATGGtttttttttGGGTGTTATTGGTCAATGCCCTTCTCATTGTT 60
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGTTATAGATATGGTCTTGTTTTGGGTGTTATTGGTCAATGCCCTTCTCATTGTT 60
Query 61 AATGCCTCTTCAAGAAATTTGCCATTTGCTTACCAAAATGAACTTCAAAGGCATTGTAGC 120
||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 GATGCCTCTTCAAGAAATATGCCATTTGCTTACCAAAATGAAATGCAAAGGCATTGTAGC 120
Query 121 TCCACAAAGTACACTTCACTTTGTGTCCAAAACTTACGAGAGTTTCGACATGGATCTCTT 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCACAAAGTACACCTCACTCTGTGTCCAAAACTTACGAGAGTTTCGACATGGATCTCTT 180
Query 181 GACGGTCTCGACTTTGTGTCAGTTCTTGTTAACAAGACTATCTCTGACTCCAATCTGCTA 240
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GACGGTCTCGACTTTGTGTCTTTTCTTGTTAACAAGACTATCTCTGATTCCAATCTGCTA 240
Query 241 ATTCCTCCTCTCTCCTCTTCGATGGGTTCCTCCGAACTAGTTTCTCTGGAAGATTCCACT 300
||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 241 ATTCCACCTCTCTCCTCGTCGATGGGTTCCTCCAAACTTGTTTCTCTGGAAGATTCCACT 300
Query 301 TATACTTTGCCTTCACCTTCGGTCTCAGATTCTTGTGAACGGCTCATGAAAATGTCCACA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATACGTTGCCTTCACCTTCGGTCTCAGATTCTTGTGAACGGCTCATGAAAATGTCCACA 360
Query 361 AGACGACTTAGGCAAGCCATGGAAGCTCTCAATGGCTCATCGAGAAAGCGTCACACCAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACGACTTAGGCAAGCCATGGAAGCTCTCAATGGCTCATCGAGAAAGCGTCACACCAAA 420
Query 421 CACGACGTCCAAACATGGCTCTCCGCCGCCATTACTTTCCAACAAGCTTGCAAAGACTCC 480
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 421 CACGATGTCCAAACATGGCTCTCCGCTGCCATGACTTTCCAACAAGCTTGCAAAGACTCC 480
Query 481 ATCCTTGACTACCG-TGAAACCTCCCCCTCCGCTGCCATCAGCCACATAAAACA-AAAGA 538
|||||||||| ||| || ||||| || || ||||||||||||||||| ||| ||| |
Sbjct 481 ATCCTTGACT-CCGGTGGCTCCTCCTCCGCCTCTGCCATCAGCCACATATCACAGAAA-A 538
Query 539 TGGATCACCTCTCTCGGCTCGTCAGCAACTCCTTGGCCCTTGTCGACACAATCATGCAGA 598
|||||||||| ||||| || |||||||||||| || | || ||||||||||||||| |||
Sbjct 539 TGGATCACCTATCTCGACTGGTCAGCAACTCCCTGACTCTGGTCGACACAATCATGAAGA 598
Query 599 ATCCAAAGCCAAAGACAAAGTCAACTGGTCTTCCCCGATGGGTCACTGCCGGAGAAAGGA 658
||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||
Sbjct 599 ATCCAAAACCAAAGACAAAGTCAACCGCTCTTCCCCGGTGGGTCACTGCCGGAGAACGGA 658
Query 659 GACTTCTGGCAGGTAGAGCAAGAGCACACGTGGTAGTCGCCAAAGACGGATCCGGAGATT 718
||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 GACTTCTAGTAGGTAGAGCAAGAGCACACGTGGTAGTCGCCAAAGACGGTTCCGGAGATT 718
Query 719 ACCGGACCGTGATGGAGGCTGTCACGGCTGCCCACGCAAATGGCA 763
|||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 719 ACCGCACCGTGATGGAGGCTGTCACGGCTGCCCATGGAAATGGCA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5