BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326514
Length=2676
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 | c... 3576 0.0
> AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 |
chr5:7289703-7296344 REVERSE LENGTH=3126
Length=3126
Score = 3576 bits (1936), Expect = 0.0
Identities = 2064/2128 (97%), Gaps = 0/2128 (0%)
Strand=Plus/Plus
Query 549 GGACAATTCAGTTGAATGTTTCAGAAGAGCATGCAAGATATTCAGTTTGGATTCTGAGCA 608
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGACAATTCAGTTGAATGCTTCAGAAGAGCATGCAAGATATTCAGTTTGGATTCTGAGCA 674
Query 609 GTTGCGCATTTGGGATATTTCTGGCCAAACAACCTTGTTTTTCGAAAGTGATGTGAGCAA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GTTGCGCATTTGGGATATTTCTGGCCAAACAACCTTGTTTTTCGAAAGTGATGTGAGCAA 734
Query 669 TTCCAAGGATTGTCAACAACAAGCAGATCAGGAAATGCTCCTAGAGCTGCAGATTTATGG 728
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 735 TTCCAAGGATTGTCAACAACAAGCAGATCAGGAAATCCTCCTAGAGCTGCAGATTTATGG 794
Query 729 ATTATCAGACTCCATCAAATTGAAGGAATCGAAAAAGGAAGATGGTTCCACACAGCAAAC 788
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 795 ATTATCAGACTCCATCAAATTGAAGGAATCAAAAAAAGAAGATGGTTCCACACAGCAAAC 854
Query 789 CAATGGGATTACCAATGGCATAAATGGTGGCACAGTGTTCAGATTTGGACGGAGTAATTC 848
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 855 CAATGGGATTACCAATGGCATGAATGGTGGCACAGTGTTCAGATTTGGACGAAGTAATTC 914
Query 849 TTTGAGCTTTTTGGGAAAAGCTGGAGAAGCTGGAACTTTGGGGTTGACAGGCTTGCAGAA 908
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TTTGAGCTTTTTGGGTAAAGCTGGAGAAGCTGGAACTTTGGGGTTGACAGGCTTGCAGAA 974
Query 909 TCTAGGAAACACTTGTTTCATGAACAGTTCCCTTCAGTGCTTGGCTCACACACCAAAGCT 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 975 TCTAGGAAACACTTGTTTCATGAACAGTTCCCTTCAGTGCTTGGCTCACACACCGAAGCT 1034
Query 969 TGTCGACTTCTTTCTTGGAGAGTACAGTAAAGAAATAAATCTTGACAACCCATTGGGAAT 1028
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1035 TGTCGACTTCTTTCTTGGCGAGTACAGTAAAGAAATAAATCTTGACAATCCATTGGGAAT 1094
Query 1029 GAAAGGTGAGATCGCCCTAGCTTTTGGTGACTTATTAAGGAGTCTGTGGGCTCCAGGTGC 1088
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1095 GAAAGGTGAGATCGCCTTAGCTTTTGGTGACTTGTTAAGGAGTCTGTGGGCTCCAGGTGC 1154
Query 1089 ATCAACAGTGGCCCCAAGGACATTTAAAGCAAAACTTGCTCGCTTTGCTCCTCAGTTTAG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 ATCAACAGTGGCCCCAAGGACATTTAAAGCAAAACTTGCTCGCTTTGCTCCTCAGTTTAG 1214
Query 1149 TGGCTTTAATCAGCATGATTCGCAGGAACTTCTAGCTTTCTTGCTGGATGGACTCCACGA 1208
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1215 TGGCTTTAATCAGCATGATTCGCAGGAGCTTCTAGCTTTCTTGCTGGATGGACTCCACGA 1274
Query 1209 GGACTTAAACCGTGTAAGGAACAAGCCTTACGTGGAAGCAAAAGATGGAGATGGCCGTCC 1268
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GGACTTAAACCGTGTAAAGAACAAGCCTTACGTGGAAGCAAAAGATGGAGATGGCCGTCC 1334
Query 1269 TGACGCGGAAGTGGCTGATGAATATTGGCGAAATCATGTTGCTCGCAATGATTCAATAAT 1328
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1335 AGACGCAGAAGTGGCTGATGAATATTGGCGAAATCATGTGGCTCGCAATGATTCAATAAT 1394
Query 1329 TGTTGATGTGTGCCAAGGCCAATACAAGTCAACATTAGTTTGCCCTATTTGCAAAAAAGT 1388
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1395 TGTTGATGTGTGCCAAGGCCAATACAAGTCAACATTAGTTTGTCCTATTTGCAAAAAGGT 1454
Query 1389 TTCTGTTATGTTTGATCCGTTCATGTACCTATCGCTACCTTTGCCATGCACATCAATGCG 1448
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1455 TTCTGTTATGTTTGATCCGTTCATGTACCTATCGCTACCATTGCCATGCACATCAATGCG 1514
Query 1449 AACAATGGATTTAACAGTCATGAGTGCCGATGGGAGTAGTTTGCCTATTCCATTGACTGT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 AACAATGGATTTAACAGTCATGAGTGCCGATGGGAGTAGTTTGCCTATTCCATTGACTGT 1574
Query 1509 CAATGTTCCTAAGTTTGGAAAATTTGAAGATCTTCATAAGGCTCTTGTCACTGCCTGCTC 1568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1575 CAACGTTCCTAAGTTTGGAAAATTTGAAGATCTTCATAAGGCTCTTGTCACTGCCTGTTC 1634
Query 1569 TTTACCAGAGGAGGAAACTTTACTGGTTACGGAGGTATACAACAATCGGATTATTCGCTT 1628
||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1635 TTTACCAGAGGAGGAGACTTTATTGGTTACTGAGGTATACAACAATCGGATTATTCGCTT 1694
Query 1629 CCTGGAGGAGCCTACTGATTCATTAACCTTGATCAGAGATGGTGACAAACTTGTCGTGTA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 CCTGGAGGAGCCTACTGATTCATTAACCTTGATCAGAGATGGTGACAAACTTGTCGTGTA 1754
Query 1689 TCGGATAAAGAAAGATGCAAACAATTCTCCTTTGATTGTGTATATGCATCAGAAGCTGGA 1748
|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1755 TCGGTTAAAGAAGGATGCAAACAATTCTCCTTTAATTGTGTATATGCATCAGAAGCTGGA 1814
Query 1749 AGAGCAGTTTATATCTGGGAAATCTAGTCCAACTTGGAAGGCATTTGGAATCCCTTTGGT 1808
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1815 AGAGCAGTTTATATCTGGGAAATCTAGCCCAACTTGGAAGGCATTTGGAATCCCCTTGGT 1874
Query 1809 CTCGAGGCTTTGTGATGTTGAGAATGGATCTGATCTCGAGAACCTGTACCTGAAACTGCT 1868
||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1875 CTCAAGGCTTTGTGATGTCGAGAATGGATCTGATGTCGAGAACCTGTACCTGAAGCTGCT 1934
Query 1869 TAGTTCATTTAAGATGCCTACTGAATTCTTCACAGAGAATCTTGAAAATCGAACTGAAGA 1928
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 1935 TAGTTCATTTAAGATGCCTACTGAATTCTTTACAGAGAATCTTGAAAACCCAACTGAAGA 1994
Query 1929 AGAAGCCACTGATAAAGCAGATACCGATGGTACTACTTCAGTTGAGGATATAAATTCCAC 1988
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1995 AGAAGCCACTGATAAAACAGATACCGATGGTACTACTTCAGTTGAGGATACAAATTCCAC 2054
Query 1989 TGATGTAAAGGAGACTACTGAATCTCTTCCAGATCCTGTGTTGAGGCTTTACCTAACCGA 2048
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2055 TGATGTGAAGGAGACTACTGAATCTCTTCCAGATCCTGTGTTGAGGCTTTACCTCACCGA 2114
Query 2049 CGACAGAGGAAACTCAATAGAATCTGAAATATTGAAAGAGAAGCCTGTAAATAAATCCAA 2108
||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 2115 CGACAGAGGAAACTCGATAGAAGCTGAAATGTTGAAAGAAAAGCCTGTAAATAAATCCAA 2174
Query 2109 GCGGGTGAATGTGCTTGCACGTTGGCCAGTAAAAGATCTTGACGTTTATGATACTTGTCT 2168
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2175 GCGGTTGAATGTGCTTGCACGTTGGCCTGTAAAAGAGCTTGACGTTTATGATACTTGTCT 2234
Query 2169 TCTGAGCTCCTTACCTGAGGTTTCCAAATTTGGAACTAAGAGACCTCAAGAATCCGTTTC 2228
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2235 TCTGAGCTCCTTACCTGAGGTTTCCAAATCTGGAACTAAGAGACCCCAAGAATCCGTTTC 2294
Query 2229 GCTTTTCAAGTGCCTTGAAGCATTCTTGACGGAGGAGCCTCTTGGTCCTGATGACATGTG 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GCTTTTCAAGTGCCTTGAAGCATTCTTGACGGAGGAGCCTCTTGGTCCTGATGACATGTG 2354
Query 2289 GTATTGTCCTGGCTGCAAAGAGCACCGGCAAGCTATCAAAAAGTTAGATCTCTGGAGGTT 2348
|||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 2355 GTATTGTCCTGGGTGCAAAGAACACCGGCAAGCCATTAAAAAGTTAGATCTCTGGAGGTT 2414
Query 2349 GCCAGAGATCCTGGTCATTCATCTGAAGAGGTTTTCGTATAGCCGGTTTATGAAGAACAA 2408
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2415 GCCAGAGATCCTGGTTATTCATCTGAAGAGGTTTTCGTATAGCCGGTTTATGAAGAACAA 2474
Query 2409 GCTGGAGGCCTATGTGGACTTCCCGCTAGATGATCTTGATCTATCAAGCTACATCTCTTA 2468
||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2475 GCTGGAGGCATATGTGGATTTCCCGCTAGATAATCTTGATCTATCAAGCTACATCTCCTA 2534
Query 2469 CAAGAATGGTCAGACAACATATCGCTACATGCTCTACGCGATTAGCAATCACTATGGGAG 2528
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2535 CAAGAATGGTCAGACAACATATCGTTACATGCTCTATGCGATTAGCAATCACTATGGGAG 2594
Query 2529 CATGGGAGGGGGTCATTACACTGCATATGTTCACCATGGAGGTGATCGATGGTATGACTT 2588
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2595 CATGGGAGGTGGTCATTACACTGCATATGTTCACCATGGAGGTGATCGATGGTATGACTT 2654
Query 2589 TGATGATAGCCATGTCCACCCAATCAGCCAAGAAAAGATCAAGACCTCGGCTGCTTACGT 2648
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2655 TGATGATAGCCATGTCCACCAAATCAGCCAAGAAAAGATCAAGACCTCGGCTGCTTACGT 2714
Query 2649 TCTGTTCTACAAACGCCTTGTAGACTAA 2676
||||||||| ||||||||||||||||||
Sbjct 2715 TCTGTTCTATAAACGCCTTGTAGACTAA 2742
Score = 676 bits (366), Expect = 0.0
Identities = 503/563 (89%), Gaps = 34/563 (6%)
Strand=Plus/Plus
Query 1 ATGAACGGGACATCGTCCGAGGAATCTTCCGATT---CAACTCAGCGGATCGATTCGTTC 57
||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||
Sbjct 1 ATGAACGGGACATCGCCCGACGAATCTCCCGATTCGACAACTCAGCGGATCGATTCGTTC 60
Query 58 AACGGCGAGCAGAGAGTCTACTTCGTCCCCTTGAGGTGGTGGAAAGATGCCCAAGATTCA 117
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 AACGGCGAGCAGAGAGTCTACTTCGTTCCCTTGAGGTGGTGGAAAGATGCGCAAGATTCA 120
Query 118 ATGCCTTCTGAATCAGTTGAAAAAAGAGAAATCTTGTATACAGCAA-CAACTGGGTCGTC 176
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 121 ATGCCTTCTGAATCAGTTGAAAAAAGAGAGATCTTGTATACAGCAAGTTGC-GGGTCGTC 179
Query 177 TTATGGCGGCCCTATGAAGTTGATAAATAACATCTTTAACTCCGATATTTTGTTCGATCT 236
|||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 180 TTATGGAGGCCCAATGAAGTTGATAAATAACATTTTTAACTCTGATATTTTGTTCGATCT 239
Query 237 GAGGAGAGAAGGAGATGCGTTACAGAATGGTGAAACGGGAGAAGCAAGCGTCTCAGGCAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGGAGAGAAGGAGATGCGTTACAGAATGGTGAAACGGGAGAAGCAAGCGTCTCAGGCAG 299
Query 297 GGACTTTGCTTTGGTCTCAA-T-AT------C--CA---A-TCAAACTG-AT----TC-- 335
|||||||||||||||||||| | || | || | | ||| || || ||
Sbjct 300 GGACTTTGCTTTGGTCTCAAGTGATATGTGGCTGCAGGCACTAAAA-TGTATCCGATCAA 358
Query 336 -T--T-CT---ATGGAATTTTTCTTATTATCTGTATCTTTTCATTCTTTGGAGATCGAGT 388
| | || |||||||||||| |||| |||| |||| ||||||||||||||| |||||
Sbjct 359 ATGATTCTTTTATGGAATTTTTCGTATTTTCTGCATCTGTTCATTCTTTGGAGAACGAGT 418
Query 389 TTTTGAAGAAGAGGCTGAGGCATCATGATGATAAAAATACTGAGAGAGGTGTAAAAAGTT 448
|||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 419 TTTTAAAGAAGAGGCTGAGGTATCATGATGATAAAAATACTGAGAAAGGCGTAAAAAGTT 478
Query 449 TCACGGCTGGAGGAGTTGACAGAGGCGATGTTTATCCAGTACAACTCAGGCTCTCCGTTT 508
|| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 479 TCTCGGCTGGAGGAGTTGACAGAGGTGATGTTTATCCTGTACAACTCAGGCTCTCCGTTT 538
Query 509 TGCAGGAAACCAATTCATTGGCG 531
|||||||||||||||||||||||
Sbjct 539 TGCAGGAAACCAATTCATTGGCG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132892232007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5