BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326521
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22340.1 | Symbols: | unknown protein; Has 56 Blast hits to... 571 4e-162
AT2G03291.1 | Symbols: | Pseudogene of AT2G22340; unknown prot... 549 2e-155
> AT2G22340.1 | Symbols: | unknown protein; Has 56 Blast hits
to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:9492879-9493955 REVERSE LENGTH=1077
Length=1077
Score = 571 bits (309), Expect = 4e-162
Identities = 571/693 (82%), Gaps = 35/693 (5%)
Strand=Plus/Plus
Query 444 ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG 502
||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| |||||||
Sbjct 405 ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG 463
Query 503 AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA 560
||| ||| | |||||| ||||||| |||||| | | ||| |||||||||| ||| | ||
Sbjct 464 AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATGAA 521
Query 561 GGTGATG-ACtttt-ttttATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCTTT 618
|||| | | |||| ||| | ||||| |||| | |||||||| | ||| ||||||||| |
Sbjct 522 GGTG--GCAATTTTCTTTGAGGATGATGATGTTCATTACTTTTCATGGACGGAAGCCTCT 579
Query 619 CTTTTATCAGAACGAGTTCATCGTTATATTCAGTTGACTTGTCTTTGGTA-CAACCCGAA 677
|||||| | ||| ||| || ||| |||||| |||| |||||||||||| ||||| ||
Sbjct 580 CTTTTACCGGAAGGAG---ATTGTTTTATTCAATTGAATTGTCTTTGGTATAAACCC-AA 635
Query 678 TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT 734
||| | |||||||||||| || ||||||||| | | ||||| |||||| |||||||
Sbjct 636 AGAAG-ACACGAGCGTGATGGGACGGAAGATGGCCT-CA-AGTGACTGTGATAGTGATGT 692
Query 735 TTTCTCTTTCCCGTGGTCGGAAAA-TCACATTTCTATGAAATGGA-AAATCATGGGT-AC 791
| |||||||| | | || |||||| | | | | | |||||| ||| |||||| | | ||
Sbjct 693 TCTCTCTTTCTCTTTGTTGGAAAATTTA-ACTGCAATGAAA-GGAGAAATCA-AGATCAC 749
Query 792 CAACCGGCAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAGA 851
|| ||||||| ||||| || ||||| || ||||| ||||||||||||||||||||||
Sbjct 750 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA 809
Query 852 ATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAATC-AGAGTAATGCGAAAAG 910
| |||||||| |||||||||| | ||| |||||||||||| | | ||||||||||||||
Sbjct 810 AGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAA-CTAAAGTAATGCGAAAAG 868
Query 911 CATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGGGGGGACGTA 970
||||||||||||||||||||| | |||||||||| || |||||||| |||| ||||||||
Sbjct 869 CATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGTA 928
Query 971 ACAGATTTTATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCAGGGTCACTTCTACTCC 1030
||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||| ||| |
Sbjct 929 ACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCATGGTCAATTCCACTTC 988
Query 1031 TTCATCGAAATTGTGT-TCAATTTCCTTTATTTGTGTCAATGGTTGTATATGAGTGGTTC 1089
|| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 989 TTTATCGAAATTGT-TATCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTGGTTT 1047
Query 1090 ATATATCATGTAAAACTCTCTTTATTG-TATAA 1121
||||||| ||||||||| | ||||| | |||||
Sbjct 1048 ATATATCTTGTAAAACT-T-TTTAT-GATATAA 1077
> AT2G03291.1 | Symbols: | Pseudogene of AT2G22340; unknown protein
| chr2:1000729-1001741 REVERSE LENGTH=1013
Length=1013
Score = 549 bits (297), Expect = 2e-155
Identities = 561/685 (82%), Gaps = 32/685 (5%)
Strand=Plus/Plus
Query 444 ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG 502
||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| |||||||
Sbjct 340 ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG 398
Query 503 AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA 560
||| ||| | |||||| ||||||| |||||| | | ||| |||||||||| ||| ||||
Sbjct 399 AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATTAA 456
Query 561 GGTGATGACttttttttATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCT-T-T 618
|||| ||||| ||| | ||||| |||| ||| |||||| | ||| ||||||||| | |
Sbjct 457 GGTGGCAACTTTCTTTGAGGATGATGATGTTGACTACTTTTCATGGACGGAAGCCTCTCT 516
Query 619 CTTTTATCAGAACGAGTTCATCGTTATATTCAGTTGACTTGTCTTTGGTA-CAACCCGAA 677
|||||| | | ||| || ||| | |||| |||| |||||||||||| ||||| ||
Sbjct 517 CTTTTACCGGTTGGAG---ATTGTTTTGTTCAATTGAATTGTCTTTGGTATAAACCC-AA 572
Query 678 TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT 734
||| | |||||||||| | |||||||||||| | | ||||| ||||| |||||||
Sbjct 573 AGAAG-ACACGAGCGTGACGGGAAGGAAGATGGCCT-CA-AGTGACCGTGATAGTGATGT 629
Query 735 TTTCTCTTTC-CCGTGGTCGGAAAA-TCACATTTCTATGAAATGGA-AAATCATGGGT-A 790
| |||||||| | | ||| |||||| | | | | | |||||| ||| |||||| | | |
Sbjct 630 TCTCTCTTTCTCTG-GGTTGGAAAATTTA-ACTGCAATGAAA-GGAGAAATCA-AGATCA 685
Query 791 CCAACCGGCAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAG 850
| || ||||||| ||||| || ||||| || ||||| ||| |||||||||||||||||
Sbjct 686 CAAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATGGAGTTTCAAAAGACAAG 745
Query 851 AATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAATC-AGAGTAATGCGAAAA 909
|| |||||||| |||||||||| | ||| |||||||||||| | | |||||||||||||
Sbjct 746 AAGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAA-CTAAAGTAATGCGAAAA 804
Query 910 GCATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGGGGGGACGT 969
| |||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||||
Sbjct 805 GTATTTTGGAGTTTCATCTATATGGTGATAGCCAATTACGAGTATGTAAAGGAGGGACGT 864
Query 970 AACAGATTTTATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCAGGGTCACTTCTACTC 1029
|||||| ||||||||||||| ||||||||||||||| || ||||| ||||| ||| |||
Sbjct 865 AACAGA-TTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCATGGTCAATTCCACTT 923
Query 1030 CTTCATCGAAATTGTGTTCAATTTCCTTTATTTGTGTCAATGGTTGTATATGAGTGGTTC 1089
||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 924 CTTTATCGAAATTGTTTTCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTGGTTT 983
Query 1090 ATATATCATGTAAAACTCTCTTTAT 1114
||||||| ||||||||| | |||||
Sbjct 984 ATATATCTTGTAAAACT-T-TTTAT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5