BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326528

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22180.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   573    5e-163


> AT5G22180.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22160.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:7353070-7353706 REVERSE LENGTH=510
Length=510

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 454/518 (88%), Gaps = 31/518 (6%)
 Strand=Plus/Plus

Query  1    ATGGCAAACAGGCAGATGGAAATAGAGACCGGATTCCCAACGCCACCGTCCTCCGCCACT  60
            ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1    ATGGCAAACAGGCATCTGGAAATAGAGACCGGATTCCCAACGCCACTGTCCTCCGCCACT  60

Query  61   GATCCTCCTCCTCCATCACGGTGGTGGACACAACTGCATTCATTATTCCTTCGTCGTAAC  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   GATCCTCCTCCTCCATCACGGTGGTGGACACAACTACATTCATTATTCCTTCGTCGTAAC  120

Query  121  GAACTCACTAAAGAAGAGAAATCAGCTATATTTTTAA----A---AC--CCTATT-T---  167
            ||||||||||||||||||||||||||||| ||   ||    |   ||  ||| || |   
Sbjct  121  GAACTCACTAAAGAAGAGAAATCAGCTAT-TTCAAAACCCCATGTACAACCTTTTATGCC  179

Query  168  -------CTTCTCCGTCGAATCCATCTCCGTTTCCCCCTCCTCTTCCGCCACGTGGCACG  220
                   | ||||| ||||||||||  ||||||||||||||||||||||||||| |||| 
Sbjct  180  ACGCCAGCGTCTCC-TCGAATCCATAACCGTTTCCCCCTCCTCTTCCGCCACGTTGCACA  238

Query  221  TTGATTTTCTCGTGAACCCGAGCTCATGGTGTCCAATCGACTACAACGGAGATGACGTGT  280
            | |||||||||||||| |||||||||| |||||| ||| | |||||||||||||||||||
Sbjct  239  TCGATTTTCTCGTGAAACCGAGCTCATCGTGTCCTATCCAATACAACGGAGATGACGTGT  298

Query  281  ACGCCAAGCTAGGCTCCTTAAACGCCGCCGAGGGTAATCAAAGAGTTTTCGAATTAGACA  340
            ||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||| 
Sbjct  299  ACGCCAAGCTAGGTTCCTTAAACGCCGCCG-G--TAATCAAAGAGTTTTCGAATTAGACT  355

Query  341  TGAAACTTAGCGCGAAGAAGAAA-AGTCCTGCGTATGG-ATATGAATATGGACATCTCGA  398
            ||||||||||  ||| ||||||| || | ||||| | | |||||||||||||||| ||||
Sbjct  356  TGAAACTTAGTACGATGAAGAAACAG-CTTGCGT-TAGTATATGAATATGGACATTTCGA  413

Query  399  TATCCGGTGTCAGAATCTGACTATTGGTTATCAGAAGACTAAGTGTCATTCGTCTTTCAA  458
            |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  414  TATCAGGTGTCAGAATCTGACTATCGGTTATCAGAAGACTAAGTGTCATTCGTCTTACAA  473

Query  459  AGCGTTGGA-GAACACGATACCTAAGCTATTGGATTAG  495
            ||||||||| || | |||||| |||||||||| |||||
Sbjct  474  AGCGTTGGATGACC-CGATACGTAAGCTATTGAATTAG  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5