BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326529
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 564 7e-160
AT5G22150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 399 2e-110
AT5G22170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 182 8e-45
> AT5G22160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22150.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7346944-7349255 FORWARD LENGTH=1062
Length=1062
Score = 564 bits (305), Expect = 7e-160
Identities = 805/1036 (78%), Gaps = 76/1036 (7%)
Strand=Plus/Plus
Query 20 CTCCTCCTCCTC--G-TGGATGGTGGTCACGACCAATAGTGACTTTGCCG-GCACTGCAT 75
|||||||||||| | ||||||||||||||||||||||||||| ||||| | | ||
Sbjct 26 CTCCTCCTCCTCGTGTTGGATGGTGGTCACGACCAATAGTGACCGTGCCGTTAAGT-AAT 84
Query 76 GATCGTGAGGCCACTTGCACGG--ACTTCACCGCttt-ttttACACCCTGTTGCGGCGGT 132
|||||||| ||||||||| || || | || | ||| ||||||||||||||| |||
Sbjct 85 GATCGTGAACCCACTTGCAAGGAAAC-T-ACTG-TTTGCCTTACACCCTGTTGCGCCGGC 141
Query 133 ATATTCACCGTCATCGCCGTACTCGTTT-TT-ATCACTCACCTCATCGATAATACTCACT 190
| |||||| || |||| ||| | ||| || ||| |||| || || ||||| ||||||
Sbjct 142 CTTTTCACCATCGTCGCTGTA-T-ATTTATTGATCTTTCACGTCGTCAATAATGCTCACT 199
Query 191 GCGACGCCAAATTCTCCATCCAATCCATCGCCGTATCTCCATCCTCTGCCACATGGCACG 250
|| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 200 GCCACGCCAAATTCTCCATCCAATCCATCGCCGTCTCTCCCTCCTCCGCCACGTGGCACG 259
Query 251 TTGATTTTCTTGTCAAAAACCCTAGC-CCTAGATA-TACTATCTACTACGGAGGCGATGA 308
| ||||| || ||||||||||||||| || || || | |||||||||||||| ||||||
Sbjct 260 TGGATTTCCTCGTCAAAAACCCTAGCTCC-AGGTACT-CTATCTACTACGGACCCGATGA 317
Query 309 AACCGCGGCGAGGCTCGGTCCCTTAAACGCTGCCGTTTTAAATGCTTCTCACGAACGTAA 368
||| || | ||| || |||||| ||||||||||||||||| || ||| ||||||||||||
Sbjct 318 AACTGCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAA 377
Query 369 GTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCGCTGCCGAGGGTAATCCAAACAACGA 428
|||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||
Sbjct 378 GTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGTAACCCTAACGGCGT 437
Query 429 A-TTTTCCAAACAATTAGATATCAAATTGA-G-CGCTAAGC-TAACGAGTTACGGAGAAG 484
||||| ||| ||||| || ||||||| | | || || | ||| || ||||||| ||
Sbjct 438 CGTTTTC-AAAGAATTATATGTCAAATTAAAGACGA-AA-CATAA-GATTTACGGA-AA- 491
Query 485 ATGATCCTAG---A-GCTGGACATGTTGATGTAAGGTGTTATAATCTGACCCGAAAAC-A 539
|| || | | | ||||||||| ||||| |||||||| | ||||| ||||||| | |
Sbjct 492 -TG-TCTTTGGTTATGCTGGACATATTGATATAAGGTGTCAAAATCTAACCCGAAG-CTA 548
Query 540 TGAGAACGTCGAGAAGATTCAATGTTACACTACTTTCACAAA-ATTGCCAGAAGCACTTT 598
||||||||| ||||||||||| || ||| || ||| |||| | || | || || |||
Sbjct 549 TGAGAACGTTGAGAAGATTCATTGCTACTCTTCTTACACAGATAT-GA-AG--GC--TTT 602
Query 599 T--TGCCAATTCCATCTCCGTCTCAAACGCGAATGCAAATGCAAATGTTTCAGTCGCTGA 656
|| ||||| |||||||||||||||| || | | |||||| ||||||
Sbjct 603 GACTGGAAATTCTGTCTCCGTCTCAAACGC-AA---A----C----GTTTCAACCGCTGA 650
Query 657 TTGGACGATCGGTTTTGCCGC-AAGAAGTCCAA-TCACTAACTGCAAAATGTCTTTTCAA 714
||||||||||||||| | || |||| |||||| | || ||| ||||| ||| | ||
Sbjct 651 TTGGACGATCGGTTTCGTTGCGAAGA-GTCCAAAT-ACCGGCTGTAAAATCTCTCTACAT 708
Query 715 ACACTCAA-GTCTCGTTTGCTCCGTGGCGACCAAGTTATTTCCAATTCATTACCTC-CTA 772
||||||| | | ||||| ||||| |||| ||||||| ||||| ||| | || ||
Sbjct 709 CCACTCAATG-CGCGTTTACTCCGAGGCGGTGAAGTTATCTCCAAATCAGCATCTTACTC 767
Query 773 TGTCCGAATATATCGGACAATTTGTGGCCGGAGACATGGCAAATGTCGTTTTCGAGAAGG 832
||| || ||| ||| | | | | ||| ||||| || ||||| ||||||||||||
Sbjct 768 -GTCTGATTATTTCGTA---TCCG-G-CCG-AGACAAACCAGATGTCCTTTTCGAGAAGG 820
Query 833 TGGTGATGCCAGAAGTTATTGGCGATGTTATTTGGGATTTTCGGGTTGAGGTTAAGTATG 892
|||| | ||| |||||||||||||| ||||||||| || |||| ||||||||| || ||
Sbjct 821 TGGTTAAGCCGGAAGTTATTGGCGACGTTATTTGGCATCTTCGAGTTGAGGTTTTGTTTG 880
Query 893 CAATGCACATAC-ATGCTGGA-GATGTGACCGTTTTAGTAATGGCGGTCTGTCCCGATAT 950
||||| ||| | ||| | | | | | || ||||| |||| || || |||||||||||
Sbjct 881 CAATGGACAC-CGATGTTTCATGTTTTAACGGTTTTT-TAATCGCCGTTTGTCCCGATAT 938
Query 951 TCCGGTTAAATTCACGACGGATTCGGCCGGAAATATGATGGGATCGTTGCTTGGAAATAT 1010
| |||| || |||||||||||| |||| || || ||||||||||||||||||| ||||
Sbjct 939 TGCGGTGAAGTTCACGACGGATCCGGCAGGGAAGGGGATGGGATCGTTGCTTGGACATAT 998
Query 1011 GAGACGGTGTGATTAT 1026
|||| |||| || |||
Sbjct 999 GAGATGGTGCGACTAT 1014
> AT5G22150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22160.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7342567-7345956 FORWARD LENGTH=993
Length=993
Score = 399 bits (216), Expect = 2e-110
Identities = 417/512 (81%), Gaps = 21/512 (4%)
Strand=Plus/Plus
Query 8 CGTCCTCGGACACT-CCTCCTCCTCGTGGATGGTGGTCACGACCAATAGTGACTTTGCCG 66
|||||||||||| | ||||||| |||| ||||||||||||| ||||||||||| | |||
Sbjct 50 CGTCCTCGGACA-TGCCTCCTCGTCGTAGATGGTGGTCACGTCCAATAGTGACACTACCG 108
Query 67 GC-ACTGCATGATCGTGAG-GCCACTTGCACGG--ACTTCACCGCttt-ttttACACCCT 121
| || ||| |||| || |||||||| | || || | | || ||| | || ||| |
Sbjct 109 CCAAC-AAATGGTCGT-AGAGCCACTTGTAAGGAAAC-T-A-CGGTTTGCTGTATACCTT 163
Query 122 GTTGCGGCGGTATATTCACCGTCATCGCCGTACTCGTTTTTATCACTCACCTCATCGATA 181
|||||||| ||||||||| ||||||||||| | || | | || |||| || |||| |
Sbjct 164 TTTGCGGCGCAATATTCACCATCATCGCCGTAATGGTATATCTCTTTCACTTCGTCGACA 223
Query 182 ATACTCACTGCGACGCCAAATTCTCCATCCAATCCATCGCCGTATCTCCATCCTCTGCCA 241
|| |||| || |||||||||||| ||||||||||||||||||| ||| | |||| | ||
Sbjct 224 ATGCTCAATGTGACGCCAAATTCGCCATCCAATCCATCGCCGTCTCT-C--CCTCAGACA 280
Query 242 CATGGCACGTTGATTTTCTTGTCAAAAACCCTAGCCCTAGATATACTATCTACTACGGAG 301
| ||||||||||||||||| |||||||||||||||||||| | | |||||||||||| ||
Sbjct 281 CTTGGCACGTTGATTTTCTCGTCAAAAACCCTAGCCCTAGGTTTTCTATCTACTACGAAG 340
Query 302 GCGATGAAACCGCGGCGAGGCTCGGTCCCTTAAACGCTGCCGTTTTAAATGCTTCTCACG 361
||||||| || | | ||| |||||| |||||| |||||||||||| ||| ||||||| |
Sbjct 341 GCGATGAGACTGAAGTGAGTCTCGGTACCTTAAGCGCTGCCGTTTTGAATACTTCTCATG 400
Query 362 AACGTAAGTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCGCTGCCGAGGGTAATCCAA 421
|||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 401 AACGTAAGTCGCCAAGTCACACGGCTTTCTCAGTGGATTTCGTTGCGGAGGGTAATCCAA 460
Query 422 ACAACGAATTTTCCAAACAATTAGATATCAAATTGAGCGCTAAGC-TAACGAGTTACGGA 480
| ||| ||||| ||||||||||| ||||||| || | || || ||| ||||||||||
Sbjct 461 ATGACGTCGTTTCCGAACAATTAGATGTCAAATTAAGGGGTACGCATAA-GAGTTACGGA 519
Query 481 GAAGA-TGATCCTAGA-GCTGGACATGTTGAT 510
||| | | || || | ||||||||| |||||
Sbjct 520 GAAAACT-ATGATA-ACGCTGGACATATTGAT 549
> AT5G22170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22150.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7350575-7351190 FORWARD LENGTH=540
Length=540
Score = 182 bits (98), Expect = 8e-45
Identities = 190/233 (82%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 799 GCCGGAGACATGGCAAATGTCGTTTTCGAGAAGGTGGTGATGCCAGAAGTTATTGGCGAT 858
|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 313 GCCGGAGACAAAACAAATGTCGTTTTTGAGAAGGTGGTGATGCCGGAAGTTATTGGCGAC 372
Query 859 GTTATTTGGGATTTTCGGGTTGAGGTTAAGTATGCAATGCACATACATGCTGGAGA-TGT 917
|| || ||| || |||| |||||| ||| || | | || | | | ||||| | | | |
Sbjct 373 GTGATCTGGAATCTTCGCGTTGAGATTATGTGTTCTGTGAAGACAGATGCT--A-ACTTT 429
Query 918 -G--ACCGTTTTAGTAATGGCGGTC-TGTCCCGATATTCCGGTTAAATTCACGACGGATT 973
| | |||||| | || || | | |||||||||||||||||||||||||||| ||||
Sbjct 430 AGAAATCGTTTT-CTGATAGC-GACTTGTCCCGATATTCCGGTTAAATTCACGAAGGATC 487
Query 974 CGGCCGGAAATATGA-TGGGATCGTTGCTTGGAAATATGAGACGGTGTGATTA 1025
|||| |||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 488 CGGCAGGAAATGT-AGTGGGATCGTTGCTTGGAAATATGAGACGGTGTGATTA 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5