BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326573
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22790.1 | Symbols: RER1 | reticulata-related 1 | chr5:75991... 1953 0.0
AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3... 333 3e-90
> AT5G22790.1 | Symbols: RER1 | reticulata-related 1 | chr5:7599146-7601690
REVERSE LENGTH=1668
Length=1668
Score = 1953 bits (1057), Expect = 0.0
Identities = 1231/1313 (94%), Gaps = 19/1313 (1%)
Strand=Plus/Plus
Query 1 ATGTCTATATCCCTTAAAATTTCCCACATTTCAACATTT-TCCAACGATGGGTTTAATAG 59
|||||||| ||||| ||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 118 ATGTCTATTTCCCTAAAAATTTCCCACATTTCAA-GTTTCTCCAACGATGGGTTCAATA- 175
Query 60 CGTAGAGCTGCGAAAGCAATGCAGATCCG-GTCAAAGGTTTGAAATTGGGTCGATTTGTT 118
|| | | ||||||||||||| | ||||||||||||||||| | ||| ||||||
Sbjct 176 -GT---G-T---AAAGCAATGCAGA-GTGAGTCAAAGGTTTGAAATTAGATCGGTTTGTT 226
Query 119 TCCGTAGAAGTTCTGGTTTTGAATCTAGACGGATCCATTTGAATTCGGACTTGTCTTCTC 178
|||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 227 TCCGTAGAAGCCCTGGTGTTGAATCTAGACGGATCCATTTAAATTCGGACTTGTCTTCTC 286
Query 179 GGAATTTGAGAAACCGATGTGTGGGATCGGATGTGGTGGCGGGTGAAATTTCCGGTAGAT 238
|||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 287 GGAATTTGAGAAACCGATGTGTAGGATCGGATGTGGTTACGGGTGAAATATCCGGTAGAT 346
Query 239 CGGTACCGGATTGGGCTTATAGCGGCTTAAAGGATGAGACTTTAAGCGATTTGGAGCCGG 298
|| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 347 CGATACCGGATTGGGCTTATAGTGGCGTAAAAGATGAGACTTTAAGCGATTTGGAGCCGG 406
Query 299 AACTTGATGATGGTGATGGCGGCGATGAGAATGGGAACAACGACggtggtggaaatggtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AACTTGATGATGGTGATGGCGGCGATGAGAATGGGAACAACGACGGTGGTGGAAATGGTG 466
Query 359 g---t--a-acggaggtggaggaggaggaggtggagaaggagatgatggagaggatgaag 412
| | | ||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 467 GTAATGGAGACGGAGGAGGAGGAGGTGGAGATGGAGAAGGAGATGATGGAGAGGATGAAG 526
Query 413 cagataaagctgaggagaaggagTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAAG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CAGATAAAGCTGAGGAGAAGGAGTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAAG 586
Query 473 AGACAGAACGTAGAGGGATTACGTTACCGGAGGATATGTTGGAAGCTGCTAAATCCGTGG 532
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 587 AGACAGAACGTAGAGGGATTACGTTACCGGAGGATATGTTGGAAGCGGCTAAATCCGTGG 646
Query 533 GGCTTCGGAAACTGTTCCTTCTTCGTTACCTCGATCTACAGGGTTCTGTTTGGCCACTTG 592
|| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 647 GGATTCGAAAACTGTTCCTTCTTCGTTACCTTGATCTACAGGGTTCTGTTTGGCCGCTTG 706
Query 593 GGTTTCTTATGAGATCATGTGCGATGCTTCGAAATAGAATGCTCGCAGATCCTTCATTTC 652
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 707 GGTTTCTGATGAGATCATGTGCGATGCTTCGAAATAGAATGCTTGCAGATCCTTCATTTC 766
Query 653 TTTTCAAAGTTGGAACCGAGATAGCCATAGACTCTTGCTGTGCAACTTTTGCTGAAGTAC 712
| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 767 TCTTCAAAGTTGGAACCGAGGTAGCCATAGACTCTTGCTGTGCAACTTTTGCAGAAGTAC 826
Query 713 AAAAGAGAGGGGAAGATTTCTGGTCAGAGTTTGAGTTGTATGCGGCTGATCTTTTGGTTG 772
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 827 AGAAGAGAGGGGAAGATTTCTGGTCAGAGTTTGAGTTATATGCTGCTGATCTTTTAGTTG 886
Query 773 GTCTTGTAGTTGATGTTGCTTTGGTTGGACTATTGGCTCCCTATGCACGTATTGGGAAGC 832
||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||||||
Sbjct 887 GTCTTGTGGTTGATGTTGCCTTGGTTGGACTTTTGGCTCCTTATGCACGTATCGGGAAGC 946
Query 833 CATTTGTGGCATCAACAGGTTTATTTAAGGACCTTAAACGTGCTTGTGCATCCCTTCCTA 892
| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 947 CGTCTGTGGCATCAACAGGTTTATTCAAGGATCTTAAACGTGCTTGTGCATCCCTTCCTA 1006
Query 893 GCAGTGTTTTTGAAGCTGAAAGACCGGGTTGTAAATTCTCAGTTAACCAGCGCATTGCAA 952
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1007 GCAGTGTTTTTGAAGCAGAAAGACCGGGTTGTAAATTCTCAGTTAACCAGCGGATTGCAA 1066
Query 953 CTTTCTTCTACAAGGGCCTCTTGTATGGGTCGGTTGGATTCGGCTGTGGCCTCATTGGTC 1012
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 CATTCTTCTACAAGGGCCTCTTGTATGGGTCGGTTGGATTCGGCTGCGGCCTCATTGGTC 1126
Query 1013 AGGGAATTGCAAATCTGATCATGACGGCAAAACGGAGTGTGAAGAAATCAGAGGAAGACG 1072
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 AGGGAATTGCAAATCTGATCATGACAGCAAAACGGAGTGTGAAGAAATCAGAGGAAGACG 1186
Query 1073 TCCCTATTCCACCTCTTTTTGAAAGCGCTGCTCTCTGGGGTGTGTTCCTCGGCATATCTT 1132
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1187 TCCCTATTCCACCTCTTTTCGAAAGCGCTGCTCTCTGGGGTGTGTTCCTCGGCTTATCTT 1246
Query 1133 CCAATGCACGTTACCAAATCATCAACGGCCTCGAGCGCGTCGTAGAAGGTTCAACAGCGG 1192
||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1247 CCAATGCGCGTTACCAAATCATCAACGGCCTCGAACGCGTCGTGGAAGGTTCTACAGCGG 1306
Query 1193 CCAAACGCATTCCTGTGGTCGCCATGGCATTCACGGTGGGAGTCCGGTTTGCTAACAATG 1252
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1307 CCAAACGTATCCCTGTGGTCGCTATGGCATTCACGGTGGGAGTCCGGTTTGCTAACAATG 1366
Query 1253 TGTATGGCGGTATGCAATTTGTGGATTGGGCTAAATTATCCGGCGTTCAGTAA 1305
|||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1367 TGTATGGCGGTATGCAATTTGTAGATTGGGCTAAATTGTCCGGCGTTCAGTAA 1419
> AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3411)
| chr2:15856632-15858920 FORWARD LENGTH=1531
Length=1531
Score = 333 bits (180), Expect = 3e-90
Identities = 696/940 (74%), Gaps = 55/940 (6%)
Strand=Plus/Plus
Query 367 ggtggaggaggaggaggtggagaaggagatgatggag-aggatgaagcagataaagctga 425
||||||||||| ||| ||||| || || |||||| | ||| ||||| | | | | ||
Sbjct 475 GGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGG-TGAAG-A-CT--A-C-GA 527
Query 426 ggagaaggagTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAAGAGACAGAACG-TA 484
|| || |||||||| ||||| ||||| |||||||| || ||||| ||||| ||| | ||
Sbjct 528 AGAAAAAGAGTTTGGACCGATATTGAAATTTGAAGAGGTCATGAAGGAGACTGAA-GCTA 586
Query 485 GAGGGA-TTACGT-TACCGGAGGATATGTTGGAAGCTGCTAA-ATCCGTGGGGCTTCGGA 541
|| ||| ||| | | || |||||||||||||||||||| | | | ||| | || |
Sbjct 587 GA-GGAGCTAC-TCTTCCATCTGATATGTTGGAAGCTGCTAAGAACTAT-GGGATCCGCA 643
Query 542 AACTG-TTCCTTCTTCGTTACCTCGATCTACAGGGTTCTGTTTGGCCACTTGGGTTT-CT 599
|| || || || ||| | ||| | ||| | ||| | || | ||| ||||||||| |
Sbjct 644 AAGTGCTT-CTCCTTAGGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGC- 701
Query 600 TATGAGATCATGTGCGATGCTTCGAAATAGAATGCTCGCAGATCCTTCATTT-CTTTTCA 658
||| |||||||| || |||||||| || |||||| | || ||||| || ||| || ||||
Sbjct 702 TATAAGATCATGGGCTATGCTTCGTAACAGAATGTTGGCTGATCCATC-TTTCCTCTTCA 760
Query 659 AAGTTGGAACCGAGATAGCCATAGACTCTTGCTGTGCAACTTTTGCTGAAGTACAAAAGA 718
|| | || | ||||||| ||| || ||||||||||| ||| |||||||||| |||||||
Sbjct 761 AAATAGGGGCTGAGATAGTCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGA 820
Query 719 GAGGGGAAGATTTCTGGTCAGAGTTTGAGTTGTATGCGGCTGATCTTTTGGTTGG-TCTT 777
||||| ||||||||||| | |||||||||||||||| ||||||||||| ||||| | |
Sbjct 821 GAGGGAAAGATTTCTGGGCGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAAC-T 879
Query 778 GTAGTTGATGTTGCTTTGGTTGG-ACTATTGGCTCCCTATGCACGTATTGGGA-AGCCAT 835
|| ||| | ||||| |||| || | | ||||| || |||| ||| || ||| | ||
Sbjct 880 GTGGTTAACATTGCTCTGGTCGGTA-TGTTGGCGCCTTATGTTCGT-TTTGGACAACC-- 935
Query 836 TTGTGGCATCAACAGGTTTATTTAAGGAC-C-TTAAACGTGCTTGTGCAT-CCCTTCCTA 892
|| |||||| | || || || ||||| | | ||| | | || | |||||||
Sbjct 936 TT-CCGCATCACCTGGCTT-CTT-AGGACGCATGGTTTTTGCATAT-AATGCGCTTCCTA 991
Query 893 GCAGTGTTTTTGAAGCTGAAAGACCGGGTTGTAAATTCTCAGTT-AACCAGCG-CATTGC 950
|||||||||||||||||||||| || || |||| ||| || | | ||| || | | ||||
Sbjct 992 GCAGTGTTTTTGAAGCTGAAAGGCCAGGATGTAGATTTTCCGCTCAAC-AGAGAC-TTGC 1049
Query 951 AACTTTCTTCTACAAGGGCCTCTTGTATGG-GTCGGTTGGATTCGGCTGTGGCCTCATTG 1009
|| | |||||||||||| | ||||||| | | |||||||| || |||||| | | |
Sbjct 1050 TACATACTTCTACAAGGGTATAATGTATGGTG-CAGTTGGATTTGGATGTGGCATTGTAG 1108
Query 1010 GTCAGGGAATTGCAAATCTGATCATGACGGCAAAACGGAGTGTGAAGAAATCAGAGGAAG 1069
|||| || ||||||||||| |||||||| || ||||| | | || |||||||| || |
Sbjct 1109 GTCAAGGCATTGCAAATCTTATCATGACTGCCAAACGAAACATAAATAAATCAGAAGA-G 1167
Query 1070 A-CGTCCCTATTCCACCTCTTTTTGAA-AGCGCTGCTCTCTGGGGTGTGTTCCTCG-GCA 1126
| | |||| | ||||| || | || || || |||||||||||||| ||| | | |
Sbjct 1168 AACATCCCGGTACCACCGCTAATC-AAGAGTGCAGCTCTCTGGGGTGTATTCTT-GAGTG 1225
Query 1127 TATCTTCCAATGCACGTTACCAAATCATCAACGGCCTCGAGCGCGTCGTAGAAGGTTCAA 1186
| ||||| ||| | ||||| ||||||||||| || || || | || || |||| |||
Sbjct 1226 TTTCTTCGAATACTCGTTATCAAATCATCAATGGTCTAGAAAGAGTGGTCGAAGCATCAC 1285
Query 1187 CAGCGGCCAAACGCA-TTCC-TGTGGTCGCC-ATGGCATTCACGGTGGGAGTCCGGTTTG 1243
| ||||| | | |||| | || || | ||||| ||||| || || || ||||| |
Sbjct 1286 CTTTTGCCAA--GAAATTCCCTCCGG-CGGCTATGGCCTTCACAGTTGGTGTACGGTTGG 1342
Query 1244 CTAACAATGTGTATGGCGGTATGCAATTTGTGGATTGGGC 1283
| || || | || ||||| ||||| ||||||||||||||
Sbjct 1343 CCAATAACATCTACGGCGGAATGCAGTTTGTGGATTGGGC 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5