BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326581
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22860.1 | Symbols: | Serine carboxypeptidase S28 family pr... 2152 0.0
> AT5G22860.1 | Symbols: | Serine carboxypeptidase S28 family
protein | chr5:7639318-7642984 REVERSE LENGTH=1741
Length=1741
Score = 2152 bits (1165), Expect = 0.0
Identities = 1391/1502 (93%), Gaps = 7/1502 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTTGCATATTCAATTCTCCTTCTATTGATATCTTCAACATCGACATCTTATTTC 60
||||||||| ||||| |||||||| ||||||| |||| ||||||||| ||||||||||
Sbjct 40 ATGTCTCTTCCATATACAATTCTCATTCTATTTATATTTTCAACATCTTCATCTTATTTG 99
Query 61 ATCTCTTTCGCACACTCCAAAATTGCTCGACTTGCGATTTCCTCAAAAACGCTAAAGAAT 120
||| | |||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 100 ATCCCCCTCGCACACTCCAAAATCGCTAGACTTGGGATTTCCTCAAAAACGCTAAAGAAT 159
Query 121 GCACCCGATGGATCAACACAAAAAATAGATGAATCTGATCTTAAAATATACTACTTTAAT 180
| ||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 160 GAACCTGATGGATCAACGCAAAAAGTAGATGAATCTAATCTTAAAATGTACTACTTTAAT 219
Query 181 CAGACGCTCGACCACTTCACATTCACACCGAAAAGCTATATGACTTTTCAACAAAGATAT 240
||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 220 CAGACACTCGATCACTTCACATTCACACCGGAAAGCTACATGACTTTTCAACAAAGATAC 279
Query 241 GCCATCAATTCCTCACACTGGGGTGGTGCTAAAGCCAACGCGCCAATCTTAGCATTTCTT 300
||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAACGCGCCAATCTTAGCATTTCTT 339
Query 301 GGAGAGGAATCGTCGTTAGACTCTGACTTGTCTGGCATCGGTTTTCTTCGTGACAACGGT 360
||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 340 GGAGAAGAATCGTCGTTAGACTCTGATTTGGCTGCCATCGGTTTTCTTCGTGACAACGGT 399
Query 361 CCTCACCTAAAAGCGCTCCTTGTCTACATAGAGCATAGGTATTATGGGAAGACGATGCCA 420
|||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 400 CCTCGCCTAAATGCGCTCCTCGTCTACATAGAGCATAGGTATTATGGGGAGACGATGCCA 459
Query 421 TTTGGATCAGCAGAAGAAACATTGAAGAACGCAAGTACGTTGGGGTATCTGAACGCAGCA 480
|||||||||||||||||| || | |||||||||||||||||||||||| |||||||||||
Sbjct 460 TTTGGATCAGCAGAAGAAGCACTAAAGAACGCAAGTACGTTGGGGTATTTGAACGCAGCA 519
Query 481 CAAGCCCTAGCAGATTACGCCGCGATTCTCTTGCACGTTAAGGAGAAGTACTCCACCAAA 540
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CAAGCCCTAGCAGACTATGCCGCGATTCTCTTGCACGTTAAGGAGAAGTACTCCACCAAT 579
Query 541 CATAGCCCTATCATTGTAATAGGAGGATCCTATGGTGGAATGTTAGCGGCATGGTTCAGG 600
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 580 CACAGCCCTATCATTGTAATTGGAGGATCCTATGGTGGAATGTTAGCGGCATGGTTCAGG 639
Query 601 CTAAAATATCCACACATAGCACTCGGAGCATTAGCATCTTCAGCTCCTCTTCTCTACTTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CTAAAATATCCACACATAGCACTCGGAGCATTAGCATCTTCAGCTCCTCTTCTCTACTTT 699
Query 661 GAAGATACTCGTCCTAAAATTGGTTATTATTATATTGTAACCAAAGTTTTCAAGGAAACG 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 700 GAAGATACTCGTCCTAAATTTGGTTATTATTATATTGTAACCAAAGTTTTCAAGGAAGCA 759
Query 721 AGTGAAAGATGTTATAACATGATCCGTAAATCGTGGAAAGAAATCGATAGAGTTGCTGCC 780
||||||||||||||||| | |||||||| || |||| |||||||||||||||||||| |
Sbjct 760 AGTGAAAGATGTTATAATACAATCCGTAATTCTTGGATAGAAATCGATAGAGTTGCTGGC 819
Query 781 AAACCCAATGGTCTCTCAATCCTTAGCAAAACA-TTCAAAACTTGCGCTCCATTGAACGG 839
||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 820 AAACCCAATGGTCTCTCGATCCTTAGCAAA-CAATTCAAAACTTGCGCTCCATTGAACGG 878
Query 840 AAGCTTCAATATCAAAGACTTCTTGGACACGATATATGCCGAAGCTGTTCAATACAACCG 899
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 879 AAGCTTCGATATCAAAGACTTTTTGGACACAATATATGCCGAAGCTGTTCAATACAACCG 938
Query 900 GGGTCCGAGTTATTGGGTGGCCAACGTGTGCAACGCAATCAACGCCAA-CACACCAAACC 958
||||||| || |||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 939 AGGTCCGAATTTTTGGGTGGCCAAAGTGTGCAACGCAATCAACGCCAATC-CACCAAACC 997
Query 959 GTAAAAACAATTTACTCGACCGAATTTTTGCTGGTGTTGTCGCTTTAATAGGCAACCGAA 1018
||| | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 998 GTAGATACAATTTACTCGACCGGATTTTTGCTGGTGTTGTCGCTTTAGTAGGCAACCGAA 1057
Query 1019 CTTGCTATGATACCAATATGTTTTCGCAGGCAACAAACAATAACATCGCATGGAGATGGC 1078
||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1058 CTTGCTATGATACAAAAATGTTTGCGCAGCCAACAAACAATAACATCGCATGGAGATGGC 1117
Query 1079 AGAGCTGCAGCGAGATAGTGATACCCGTGGGATATGACAAACAAGATACAATGTTTCCAA 1138
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1118 AGAGCTGCAGCGAGATAGTGATGCCCGTGGGATATGACAAACAAGATACAATGTTCCCAA 1177
Query 1139 CGGCACCGTTTAACATGACCAGTTACATTGATGGGTGTGAGTCTTATTATGGTGTCCCTC 1198
||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||| |||
Sbjct 1178 CGGCACCATTTAACATGACCAGTTACATTGATGGATGTAAGTCTTATCATGGTGTCACTC 1237
Query 1199 CTAGACCACATTGGATCACAACGTACTTCGGCACTCAGGATGTCAAGTTAATCCTCCGAA 1258
|||||||||||||||||||||| || ||||||| |||||| |||||||||||||||| ||
Sbjct 1238 CTAGACCACATTGGATCACAACTTATTTCGGCATTCAGGAGGTCAAGTTAATCCTCCAAA 1297
Query 1259 GATTTGGGAGCAACATCATTTTTTCTAATGGATTGTCAGATCCTTACAGCGTTGGCGGAG 1318
|||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 1298 AATTTGGAAGCAACATCATTTTCTCTAATGGATTGTCTGATCCTTATAGCGTTGGCGGAG 1357
Query 1319 TCTTGGAGGATATTTCAGATACTGTAGTCGCAATCACGACAAA---TGGTTCACATTGTC 1375
| ||||||||||||||||||||| |||| || || |||||||| ||||||||||||||
Sbjct 1358 TTTTGGAGGATATTTCAGATACTTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTC 1417
Query 1376 AAGATATCAGTTTGAAGAACAAAGAAGATCCGCAGTGGCTGGTGATGCAAAGAGAGAAAG 1435
|||||||| ||||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1418 TAGATATCACCTTGAAGAGCAAAGAAGATCCGGAGTGGCTAGTGATTCAAAGAGAGAAAG 1477
Query 1436 AGATTAAAGTTATTGATTCTTGGATTTCAACGTACCAAAATGATCTACGAGATCTTAACA 1495
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1478 AGATTAAAGTTATTGATTCTTGGATTTCAACTTATCAAAATGATCTAAGAGATCTTAACA 1537
Query 1496 TG 1497
||
Sbjct 1538 TG 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5