BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326585
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22890.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1613 0.0
> AT5G22890.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:7653257-7654724 REVERSE LENGTH=1468
Length=1468
Score = 1613 bits (873), Expect = 0.0
Identities = 1033/1111 (93%), Gaps = 8/1111 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGAGATGAGCATATTACAAATAAAGGAGAAGGGTCAATGTCTAGCTTCTCC-GG 59
||||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||| ||
Sbjct 78 ATGAATCGAGATGAGCATATTGCAAAGAAAGTTGAAGGATCAATCTCTAGCTTCTCCGGG 137
Query 60 GACGACCAGTACTTCCTCAAAACAAATCTCCCTTAATCCCGTGACCGCGGCCGGGGCAAA 119
|| |||||||||||||||||||||||||| |||||||||||||| || ||||| | ||
Sbjct 138 GA-GACCAGTACTTCCTCAAAACAAATCTATGTTAATCCCGTGACCACGACCGGGACGAA 196
Query 120 ATCATTGGAAGAAGACGACGTTTCACTCTCCCTTCTATATAATCTGTCTACCTTACAAGA 179
|||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 197 ATCAATGGAAGACGACGACGTTTCACTCTCTCTTCTATACAATCTATCTACCTTACATGA 256
Query 180 CAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGATATCTAGTAATAACATTAA 239
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 257 AAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGGTATCTACTAATAACATTAA 316
Query 240 TCAATACTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGAT 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CCAATCCTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGAT 376
Query 300 CATTACGGCTGCTTCATCCATGTTGTACACTTGCCAACAACTCCACATCGGATCT---AA 356
||| |||||||||||||||||||| || ||||||||||||||||| ||||||||| ||
Sbjct 377 CATCACGGCTGCTTCATCCATGTTATATACTTGCCAACAACTCCAAATCGGATCTAACAA 436
Query 357 CAACAGCAACGATATCGATAACGATCACACCGTAGATGCAATGGTTTTGGAGTTTTCCCG 416
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 437 CAACAACAACGATATCGATAATGATCAAACCGTAGATGCAATGGTTTTGGAGTTTTCCCG 496
Query 417 ACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTTCA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 497 ACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTCCA 556
Query 477 AGAAAGAGGACAGGTCTCGTTTCCTAACCAGAATCATGACTGGTATGACACAGAAACCCT 536
||||||||| ||| |||||||||| ||||||||| ||| ||||| |||| |||||| |
Sbjct 557 AGAAAGAGGGCAGATCTCGTTTCCCGACCAGAATCTTGATTGGTACAACACCGAAACCAT 616
Query 537 AAATCCTAAAAAAGATAAACATCGTTCTAAACCAAAACCCGGGAACTACGAGATATTGGA 596
||| ||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||
Sbjct 617 AAACCCTAAAAAAGATAAACATCGTTCTAAACCAAGTTCCGGGAGCTACGATATACTGGA 676
Query 597 GCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGG 736
Query 657 GTTTAAGAGAGACGCGAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGAC 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GTTTAAGAGAGACGCTAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGAC 796
Query 717 ACGCGAGGCCTTAATCAGCCCAACGAGCCAAGAAAAGAAAGGAGAATACACGTTGAAGAA 776
||| |||||||| |||||||||||||||||||| |||||||||| |||| |||| |||||
Sbjct 797 ACGTGAGGCCTTGATCAGCCCAACGAGCCAAGACAAGAAAGGAGGATACTCGTTAAAGAA 856
Query 777 ACATTACTACTCGTGCCCTCATCAAGGGTGTAGATGGAACCAGAGACACGAGAAGTTCCA 836
|||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 857 ACATTACTACTCCTGTCCTCAACACGGGTGTAGATGGAACCAGAGGCACGAGAAGTTTCA 916
Query 837 ACCGTTGAAATCTGTGATTTGTGCCAAGAATCATTACAAGAGGAGTCATTGTCCTAAAAT 896
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 917 ACCGTTGAAATCTGTGATTTGCGCCAAGAATCATTACAAGAGGAGTCATTGTCCCAAAAT 976
Query 897 GTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACGCA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 977 GTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACACA 1036
Query 957 CGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAA 1096
Query 1017 AGACAAGCTTATGAGCCACGTTTCTTTGTTCTTGGGCCACGTACCGGCACATGGGTCGTC 1076
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1097 AGACAAGCTGATGAGCCACGTTTCTTTGTTTTTGGGCCACGTACCGGCACATGGGTCGTC 1156
Query 1077 CCAGCCGCCAACAACAATCACACTAAAGTAA 1107
| ||||||| |||| |||| |||||||||
Sbjct 1157 CAAGCCGCCGACAA---TCACCCTAAAGTAA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5