BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326587
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22910.1 | Symbols: ATCHX9, CHX9 | cation/H+ exchanger 9 | ... 3618 0.0
> AT5G22910.1 | Symbols: ATCHX9, CHX9 | cation/H+ exchanger 9
| chr5:7660927-7663829 REVERSE LENGTH=2403
Length=2403
Score = 3618 bits (1959), Expect = 0.0
Identities = 2258/2406 (94%), Gaps = 6/2406 (0%)
Strand=Plus/Plus
Query 1 ATGACCGATTCTCAAGCACTAGCTCCTGCGCCTTCACCGCCTCATAGCAAAGCTGAAATT 60
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGACCGATTCTCAAGCACTAGTTCCTGGGCCTTCACCGCCTCATAGCAAAGCTGAAATT 60
Query 61 TGTTACGGAGCGACTTTTTACAACATCTCTTCTTACGGAATCTTGGAAAAATATGAAACT 120
||||||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 61 TGTTACGGAGCTACTTTTTTCAACATCTCTTCTTATGGAATCATGGAAAAATATGAAACT 120
Query 121 CCGACTATTATCTTCGGATATGCATTGCCTCTCCTTGAGCTGCAAATCATTCTCATCTTC 180
|| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCTACTGTTATCTTCGGATATGCATTGCCTCTCCTTGAGCTGCAGATCATTCTCATCTTC 180
Query 181 GTTTCCATCGTCTTATCTCATATGTTCCTCAGACGTATTGGCATACCACAGTTCGTCTCC 240
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GTTTGCATCGTCTTATCTCATATGTTCCTCAGACGTATTGGCATACCACGGTTCGTCTCC 240
Query 241 AACATGCTTGCCGGTTTGATT-TTGGGACCTCAGCTGATTGATCTTCTGGAGTATTCATC 299
||||| ||||| ||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 241 AACATACTTGCTGGTTTGATTCTT-GGACCTCAGCTGCTTGATCTTCTGGAGTATTCATC 299
Query 300 AGACCGGTTATCGTTAGACGTCCCTGGAAACGTAATGTTGGAAGGTGTGGCCAGGCTTGG 359
||||| |||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 300 GGACCGATTATCGTTAGACATCCCCGGAAACGTAGCGTTGGAAGGTGTGGCCAGGCTTGG 359
Query 360 GTTGGTAATGTTCACGTTCTTGATGGGCGTGAAGACCAACAAGAGAGCGGTGTATAAAAT 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GTTGGTAATGTTCACGTTCTTAATGGGCGTGAAGACCAACAAGAGAGCGGTGTATCAAAT 419
Query 420 CGGTAAACGGCCGGTAGCGATCGCGGTTTCGTCCTTTTTAGTGACTATGATCAGTGGATT 479
||||||||| ||| ||| |||||||||||||||||||| |||||||||||||| || ||
Sbjct 420 CGGTAAACGTCCGATAGTAATCGCGGTTTCGTCCTTTTTCGTGACTATGATCAGCGGGTT 479
Query 480 AGCCTTCAGAAACTTCCGTCTCGACAAGATCGACCCTCTTTATATGCCTCTGAGGCTGGC 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 480 AGCCTTCAGAAACTTCCGTCTCGACAAGGTCGACCCTCTTTATATGCCTCTGAGGCTAGC 539
Query 540 CCCAACAGAACGCAGCGTGATTGTATCCATTCAAGCAGTAACGTTGTTACCGGTCATAAC 599
||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 540 CCCAACAGAACGCTCCGTGATTGTATCGATTCAAGCAGTAACGCTGTTACCGGTCATAAC 599
Query 600 CCACCTCGTATATGAGCTCAAGATGCCAAACTCCGAGCTCGGCCGCATCGCCATATCTAC 659
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 CCACCTCGTATATGAGCTGAAGATGTCAAACTCCGAGCTCGGCCGCATCGCCATATCTAC 659
Query 660 CGCTGCCGTCAGCGATTTCCTTGGATTTATCACTCTGGTATGCATCTCCTACGTAGGAAC 719
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 660 AGCCGCCGTCAGCGATTTCCTTGGATTTCTCACTCTAGTATGCATCTCCTACGTTGGAAC 719
Query 720 ATACAGGTACGCATCACCCAGAATAGCCAACCGCGACATAGTGGCATTGATCATCTTAGT 779
||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATACAGGTATGTATCGCCCGGAATAGCCAACCGCGACATAGTGGCATTGATCATCTTAGT 779
Query 780 CCTTGTGATCATATTCATCGTAAAGCCAATGGCACAACGAATAGTCGACATGACCCCAGA 839
|||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CCTTGTGATCCTATTCATCTTCAAGCCAATGGCACAACGAATAGTGGACATGACCCCAGA 839
Query 840 AGGCAAGCCCGT-CCGGAAAATCTACTTATACGTAACAATCCTGACCGCAATCTTCGCGA 898
|||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 840 AGGCAAGCCCGTACC-GAAAGTCTACTTATACGTAACAATCCTGACCGCAATCGCCGCGA 898
Query 899 GTATTTACACAAGTGTTTTCAACCAAATGTACGTTCTAGGACCTTTATTGGTGGGGTTGG 958
|||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 899 GTATATACTTAAGTGTTTTCAACCAAATGTACATTCTAGGAGCTTTATTGGTGGGGTTGG 958
Query 959 CGATCCCAGACGGTCCGCCTCTGGGATCTGCGTTAGAGGCAAGGTTCGAGAGCTTGATTA 1018
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 959 CAATCCCAGACGGTCCGCCTCTGGGATCTGCGTTAGAGGCAAGGTTCGAGAGCTTGGTTA 1018
Query 1019 CAAACATATTTTTCCCTATTTCAATCGCGCTCATGACGATGAAAGGTGACGTTGTAAGGG 1078
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| |
Sbjct 1019 CAAACATATTTTTCCCTATTTCAATCGCGGTCATGGCGATGAAAGCTGACGTTGTAAGAG 1078
Query 1079 CATTGTATTCGTTCGATGACATCTCCTTAAACATATTTCTGCTGGGTCTTACAGTGGTCG 1138
|||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||| |
Sbjct 1079 CATTGTATTCGTTCGATGACATTTCCTTTAACATACTTCTACTGGGTCTTACAGTGGTAG 1138
Query 1139 TTAAATGGACTGCTTCTTTTGTACCTTGCTTGATTTTCTGCGAGTTACCTACTAGAGAAT 1198
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 TGAAATGGACTGCCTCTTTTGTACCTTGCTTGATCTTCTGCGAGTTACCTACTAGAGAAT 1198
Query 1199 CCGTTATCATCGCCACTATCATGAACTATAAGGGTTTTGTCGACTTATGCTTCTTCGATG 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 CCGTTATCATCGCCACTATCATGAACTATAAGGGTTTTGTTGACTTATGCTTCTTCGATG 1258
Query 1259 TCGCCTTAAAAAGAAGGAATTTGTCGCGAGCAACGTACACGGTCATGATTATTTACGTGC 1318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCGCCTTAAGAAGAAGGAATTTGTCGCGAGCAACGTACACGGTCATGATTATTTACGTGC 1318
Query 1319 TATTGAACGCGGGGATTTTGCCTACTATTGTGAAAGCACTATATGATCCAAAGAGGAAGT 1378
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1319 TATTGAACGCGGGGATTTTGCCTACGATTATAAAAGCACTATATGATCCAAAGAGGAAGT 1378
Query 1379 ATATTGGATACGTCAAGAGAGACATTATGCATCTGAAAACAAACTCAGATCTCAAGATTC 1438
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 ATATTGGATATGTCAAGAGAGACATTATGCATCTTAAAACAAACTCAGATCTCAAGATTC 1438
Query 1439 TAACTTGTTTGCATAAACCGGACAACATTTCAGGCGCAATTTCGCTGCTTCAATTGCTTT 1498
||||||||||||| || || |||||||| ||||| || || ||||| ||| |||||||||
Sbjct 1439 TAACTTGTTTGCACAAGCCTGACAACATCTCAGGTGCGATCTCGCTACTTGAATTGCTTT 1498
Query 1499 CCTCGCCCCTAAACAACGATAACAAAGACAGAGGAGTCATTGCTGTCACAGCGTTACACC 1558
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 CCTCGCCGCTAAACAACGATAACAAAGACAGAGGAGTCATTGCTGTCACGGCGTTACACC 1558
Query 1559 TAGTGAAGCTTGCCGGACGTACGTTTCCCATCTTGATACCGCATGACAAGCGGTCTAAAG 1618
||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1559 TAGTGAAACTCGCAGGACGTACGTTTCCCATCTTGATACCTCATGACAAGCGGTCTAAAG 1618
Query 1619 CGCGGTTGCTTCAAAACTCTTACATCCAAACAATGATGCTCGCGTTCACCGAGTTTCAAC 1678
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1619 CGCGGTTGCTTCAAAACTCTTACATACAAACAATGATGCTCGCGTTCACCGAGTTTCAAC 1678
Query 1679 AAGAGAATTGGGAATATACGACTGTTAGTTCCTTCACAGCTTATTCTCGTGAGGATCTAA 1738
||||||||||||||| ||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 1679 AAGAGAATTGGGAATCTACCACTGTTAGTTCCTTCACAGCTTATTCTCATGAGAACCTAA 1738
Query 1739 TGGATCAAGACATTTGCAATCTTGCTTTAGACCACCTTACATCGATGATCATAGTCCCTT 1798
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1739 TGGATCAAGACATTTGCAATCTTGCTTTAGACCACCTCACATCGATGATCATTGTCCCTT 1798
Query 1799 CGGGGCGAAAATGGTCACCCGATGGAGTATATGAATCAGACGATATTATGATCAGACAAG 1858
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1799 CGGGACGAAAATGGTCACCCGATGGAGAATATGAATCAGACGATATTATGATCAGACGTG 1858
Query 1859 TGAATGATTCTCTCCTCGACCGCGCTCCATGTTCTATCGGCGTACTCAATTACCGAGGAT 1918
| ||||| |||||||| |||| ||||||||||||| ||||| |||| || ||||||||||
Sbjct 1859 TTAATGAATCTCTCCTTGACCTCGCTCCATGTTCTGTCGGCATACTTAACTACCGAGGAT 1918
Query 1919 ATAGTAAAGGTAAGAAAAGGAAAAATAGTACCATTAACGTTGGTGTGATCTTCATTGGTG 1978
||| |||||||||||||| || || |||| |||||||||||||||||||||||||||||
Sbjct 1919 ATAATAAAGGTAAGAAAAAGACCAACAGTATCATTAACGTTGGTGTGATCTTCATTGGTG 1978
Query 1979 GTAAAGATGATCGCGAGGCGCTCTCGCTTGCGAAATGGATGGGACAGAACTCGAGAGTAT 2038
||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1979 GTAAAGATGATCGTGAGGCGCTTTCCCTTGCGAAATGGATGGGACAGAACTCGAGAGTGT 2038
Query 2039 GTCTTACTGTGATCAGATTTTTGTCTGGTCAAGAACTAGATAAGTCCAAGAATTGGGATT 2098
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 GTCTTACTGTTATCAGATTTTTGTCTGGTCAAGAACTAGATAAGTCCAAGAATTGGGATT 2098
Query 2099 ACCTTGTTGATGACGAGGTCTTGAATGATTTGAAAGCAACATATTCACTCGCCAACAATT 2158
|||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 2099 ACCTTGTTGACGACGAGGTCTTGAATGATTTGAAAGCGACATATTCATTGGCCAACAATT 2158
Query 2159 TTAACTATATGGAGAAGATAGTCAACGGTGGACCTGCGGTGGCCACCACCGTTAGATTGG 2218
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 TTAACTATATGGAGAAGGTAGTCAACGGTGGACCTGCGGTGGCCACCACCGTTAGATTGG 2218
Query 2219 TGGCGGGAGACAATGATTTGATGATTGTAGGAAGAGATCACGAAGATTATTCGTTGGA-T 2277
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2219 TGGCGGAAGACCATGATTTGATGATTGTAGGAAGAGATCACGAAGATTATTCGCTGGACT 2278
Query 2278 GTCACAGGATTGGCACAGTGGATGGAGCTTCCGGAGTTAGGAGTTATCGGTGATTTGCTT 2337
| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2279 -TAACAGGGTTGGCACAGTGGATGGAGCTTCCGGAGTTAGGAGTCATCGGAGATTTGCTT 2337
Query 2338 GCATCTAAAGATTTAAAAACTAGGGTTTCTGTTTTAGTAGTTCAACAACAGCAACAACAT 2397
||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 2338 GCATCCAAAGATTTAAGAGCTAGGGTTTCTGTTTTAGTAGTTCAACAACAACAACAACAT 2397
Query 2398 GAATGA 2403
| ||||
Sbjct 2398 GGATGA 2403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119326695465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5