BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326599
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | 2-isopropylmalate sy... 1748 0.0
AT5G23010.1 | Symbols: MAM1, IMS3 | methylthioalkylmalate synth... 1548 0.0
> AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | 2-isopropylmalate
synthase 2 | chr5:7718121-7721839 FORWARD LENGTH=1799
Length=1799
Score = 1748 bits (946), Expect = 0.0
Identities = 1331/1518 (88%), Gaps = 21/1518 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCGTTACTTCTCACATCTTTCG-GTATGATCACCACCACCGGTCCCACCCTTGT 59
||||||||||||||||||||||| ||| ||||||| ||||| | | ||| | || | ||
Sbjct 83 ATGGCTTCGTTACTTCTCACATC-GTCGAGTATGATAACCACTAGCTGTCGCTCCATGGT 141
Query 60 TGTCCGGTCAGTGTTACCCATTGGATCTTCTCAGCCCTCAATCCGCCTGACCCGCCCGTG 119
| ||||||||| ||||||||| ||||||||| ||||| | ||||||||||| || |
Sbjct 142 TCTCCGGTCAGGGTTACCCATCGGATCTTCTTTTCCCTCTCTTCGCCTGACCCGTCCATA 201
Query 120 CAACAAGCCGACTTTGTTCATCTCATGTTGCTCCTCTGAGTCCAAAAAGGTGGTAACTAG 179
| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 202 CGACAAGGCGACTCTGTTCGTCTCATGTTGCTCCGCTGAGTCCAAAAAGGTGGCAACTAG 261
Query 180 TGCTACTGACCTCAAACCTATCGTGGAACGGTGGCCAGAGTACATACCGAACAAGC-TCC 238
||||||||| |||||||||||| |||||||| |||| |||||||| |||||||||| |||
Sbjct 262 TGCTACTGATCTCAAACCTATCATGGAACGGAGGCCGGAGTACATTCCGAACAAGCTTCC 321
Query 239 CCGACAAGAACTATGTACGTGTACTCGACACGACACTTCGTGAGGGCGAACAAGCTCCAG 298
|| ||||||||||||| |||||| | |||||||| |||||||| || |||||| |||| |
Sbjct 322 CC-ACAAGAACTATGTGCGTGTATTAGACACGACGCTTCGTGACGGTGAACAATCTCCCG 380
Query 299 GTGGATCCCTTACTCCGCCGCAGAAGCTAGAGATTGCCCGGCAACTCGCTAAACTCCGAG 358
||| | | |||||||| ||||||||| ||||||||||| |||| || |||||||||||||
Sbjct 381 GTGCAGCACTTACTCCACCGCAGAAGTTAGAGATTGCCAGGCAGCTAGCTAAACTCCGAG 440
Query 359 TAGACATCATGGAAGTCGGTTTTCCGGGGTCATCTGATGAAGAGTTCGAAACCGTTAAAA 418
|||||||||||||||| |||||||||| ||| ||||| ||||| |||||| | ||||||
Sbjct 441 TAGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAGGAAGAATTCGAAGCTATTAAAA 500
Query 419 CTATCGCTAAGACCGTGGGGAATGAGGTGGATGTGGAAACAGGTTATGTCCCGGTGATAT 478
| ||||| |||||||||||||| |||||||||| |||||| ||||| || || |||||||
Sbjct 501 CCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAAACCGGTTACGTTCCTGTGATAT 560
Query 479 CCACCCTCGCACGATGCATAAATAGAGACGTTGAGGCCGCTTGGAAGGCGGTGAAGTACG 538
| | | |||||||||| ||| |||||| | ||||| ||||| |||| ||||||| |
Sbjct 561 GCGGCATTGCACGATGCAAAAAGAGAGACATCGAGGCAACTTGGGAGGCACTGAAGTATG 620
Query 539 CGAAGAGGCCAAGGAT-ATGCATATTTACATCTACTAGTGATATTCACATGAACTATAAG 597
|||||||||| ||| | |||| |||| |||||||||||||| ||||||||||| ||||||
Sbjct 621 CGAAGAGGCCGAGGGTAATGC-TATTCACATCTACTAGTGAAATTCACATGAAATATAAG 679
Query 598 TTGAAAAAGACTAAAGAAGAAGTGATCGAGATGTCCTTGAGTAGTATTAGGTTCGCTAAA 657
||||||||||||||||||||||||||||||||| || ||| ||| ||| || |||||||
Sbjct 680 TTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTGAACAGTGTTAAGTACGCTAAA 739
Query 658 AGCTTAGGCTTCCATGACATCCAATTTGGTTGCGAAGACGGCTGCAGGTCGGAGAAGGAG 717
||||| |||||| | |||||||||||||| |||||||| ||| ||||| ||||||| ||
Sbjct 740 AGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGATGGCGGCAGGACGGAGAAAGAT 799
Query 718 TTTGTATGTAAGATTCTAGGAGAAGCGATAAAAGCGGGTGCTACTTCGGTGTGCATCGCG 777
||| |||||||||||||||||||| |||||||||||||||| || ||||| | | |||
Sbjct 800 TTTATATGTAAGATTCTAGGAGAATCGATAAAAGCGGGTGCAACCACGGTGGGGTTTGCG 859
Query 778 GACACGGTAGGGATCACCATGCCACATGAATTCGGAGAACTCGTGACCTTTGTCAAAGCA 837
|||||||| ||||||| |||||| || |||||||||||||||||| ||| ||||| || |
Sbjct 860 GACACGGTCGGGATCAACATGCCGCAAGAATTCGGAGAACTCGTGGCCTATGTCATAGAA 919
Query 838 AACACTCCAGGAATTGATGATGTTGTCTTCAG-CGTTCATTGTCACAACGACCTTGGTCT 896
||||||||||| ||||||| |||||||| | | |||||||||| |||||||||||| |
Sbjct 920 AACACTCCAGGGGCTGATGATATTGTCTTC-GCCATTCATTGTCATAACGACCTTGGTGT 978
Query 897 TGCTACCGCAAACACAATCGCTGCTGTATGTGCCGGAGTGAGACAATTCGAAGTAACAAT 956
||||||||| |||||||| | | | ||||||| |||| |||||| ||||||| || ||
Sbjct 979 TGCTACCGCCAACACAATATCCGGTATATGTGCGGGAGCAAGACAAGTCGAAGTGACGAT 1038
Query 957 CAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAA 1098
Query 1017 ATGTCGAGGAGCATATCTTATGGATGGTGTTTACACAAGAATAGACACACGCCAAATTAT 1076
||||||||||| || ||| ||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1099 ATGTCGAGGAGAATCTCTGATGGATGGTGTTTACACAAAAATAGACTCACGCCAAATTAT 1158
Query 1077 GGCTACTAGCAAGATGGTTCAAGAGCATACCGGCTTGTATGTTCAACCACATAAGCCAAT 1136
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1159 GGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTATGTTCAACCACATAAGCCAAT 1218
Query 1137 AGTTGGAGACAACTGTTTTGTTCATGAAAGCGGCATTCACCAGGATGGAATATTAAAAAA 1196
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1219 AGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAA 1278
Query 1197 TCGAAGTACATATGAGATTTTATCACCAGAAGATGTTGGAATCGTAAAATC-GCAAAATT 1255
|||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1279 TCGAAGTACATATGAGATCTTATCACCAGAAGATGTTGGGATCGTAAAATCTG-AAAATT 1337
Query 1256 CAGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCTATAAAAGACAGGCTTAAAGAGT 1315
| ||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 1338 CTGGCATTGTTCTTGGAAAGCTTAGCGGACGTCATGCTGTAAAAGACCGGCTTAAAGAGT 1397
Query 1316 TGGGATATGAAATC-GATGATGAGAAATTCAACGAAATCTTCTCACGATTCAGAGATTTA 1374
|||||||||||||| | |||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1398 TGGGATATGAAATCAG-TGATGAGAAATTCAACGACATCTTCTCACGATACAGAGAATTA 1456
Query 1375 ACCA-GTA------GA-ATT-ACCGACGCTGATCTGAAGGCATTAGTGGTGAACGGTGAT 1425
|| | | | || | | || |||||||||||||||||||||||||||||||||| |
Sbjct 1457 ACGAAGGACAAAAAGAGAATCACAGACGCTGATCTGAAGGCATTAGTGGTGAACGGTGCT 1516
Query 1426 GAAATCACATCAGAGAAATCAAACAGTAAAGGAATTAACAACCTTATGTCAAGTCCTCAT 1485
|||||| ||||||| |||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 1517 GAAATCTCATCAGAAAAATTAAACAGTAAAGGAATTAACGACCTTATGTCAAGCCCTCAG 1576
Query 1486 ATTTCCTCTGTTGTATAA 1503
|||||| |||||||||||
Sbjct 1577 ATTTCCGCTGTTGTATAA 1594
> AT5G23010.1 | Symbols: MAM1, IMS3 | methylthioalkylmalate synthase
1 | chr5:7703092-7706896 FORWARD LENGTH=1729
Length=1729
Score = 1548 bits (838), Expect = 0.0
Identities = 1211/1391 (87%), Gaps = 26/1391 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCGTTACTTCTCACATCTTTCGGTATGATCACC-ACCACCGGTCCCACCCTTGT 59
|||||||| | ||||| ||||||| || ||||||| || ||||||||| ||||| | ||
Sbjct 82 ATGGCTTCATCGCTTCTGACATCTTCCGTTATGATC-CCTACCACCGGTTCCACCGTGGT 140
Query 60 TGTCCGGTCAGTGTTACCCATTGGATCTTCTCAGCCCTCAATCCGCCTGACCCGCCCGTG 119
|| |||||||||||||||| || |||||| | || ||| |||||||||||| |||
Sbjct 141 TGGCCGGTCAGTGTTACCCTTTCAATCTTCCCTGCACTCTCTCCGCCTGACCCATTCGTA 200
Query 120 CAACAA-GCCGACTTTGTTCATCTCATGTTGCTCCTCTGAGTCCAAAAAGGTGGTAACTA 178
||| || ||| | |||||||||||||||||||| |||| ||||||||| | || |||||
Sbjct 201 CAAGAACCCCG-CATTGTTCATCTCATGTTGCTCTTCTGTGTCCAAAAATGCGGCAACTA 259
Query 179 GTGCTACTGACCTCAAACCTATCGTGGAACGGTGGCCAGAGTACATACCGAACAAGCTCC 238
|| ||||||| |||||||| | |||||||||||||| |||||||||||||||||||| |
Sbjct 260 GTTCTACTGATCTCAAACCCGTTGTGGAACGGTGGCCGGAGTACATACCGAACAAGCTTC 319
Query 239 CCGACAAG-AACTATGTACGTGTACTCGACACGACACTTCGTGAGGGCGAACAAGCTCCA 297
||||| | |||||||| |||||| |||||||||| || ||||| || |||||| ||||
Sbjct 320 CCGAC-GGAAACTATGTGCGTGTATTCGACACGACGCTCCGTGACGGTGAACAATCTCCT 378
Query 298 GGTGGATCCCTTACTCCGCCGCAGAAGCTAGAGATTGCCCGGCAACTCGCTAAACTCCGA 357
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 379 GGTGGATCCCTCACTCCGCCGCAGAAGCTAGAGATTGCCCGACAGCTCGCTAAACTCCGA 438
Query 358 GTAGACATCATGGAAGTCGGTTTTCCGGGGTCATCTGATGAAGAGTTCGAAACCGTTAAA 417
||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||
Sbjct 439 GTAGACATCATGGAAGTCGGTTTTCCGGGATCATCTGAAGAAGAGTTAGAAACCATTAAG 498
Query 418 ACTATCGCTAAGACCGTGGGGAATGAGGTGGATGTGGAAACAGGTTATGTCCCGGTGATA 477
|| ||||| ||||| ||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 499 ACCATCGCCAAGACTGTGGGGAATGAGGTGGATGAGGAAACAGGTTACGTCCCTGTGATA 558
Query 478 TCCACCCTCGCACGATGCATAA-ATAGAGACGTTGAGGCCG-CTTGGAAGGCGGTGAAGT 535
| | || | || ||||||| || |||||||| ||||||| | ||||| ||||| ||||||
Sbjct 559 TGCGCCATAGCTCGATGCA-AACATAGAGACATTGAGGC-GACTTGGGAGGCGCTGAAGT 616
Query 536 ACGCGAAGAGGCCAAGGATA-TGCATATTTACATCTACTAGTGATATTCACATGAACTAT 594
|||||||||||||||||||| | | |||| |||||||||||||| ||||||||||| |||
Sbjct 617 ACGCGAAGAGGCCAAGGATACT-CGTATTCACATCTACTAGTGACATTCACATGAAATAT 675
Query 595 AAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGTCCTTGAGTAGTATTAGGTTCGCT 654
||||||||||||||| ||||||||||||| |||||| || |||||||||||||||| |||
Sbjct 676 AAGTTGAAAAAGACTCAAGAAGAAGTGATTGAGATGGCCGTGAGTAGTATTAGGTTTGCT 735
Query 655 AAAAGCTTAGGCTTCCATGACATCCAATTTGGTTGCGAAGACGGCTGCAGGTCGGAGAAG 714
|||||||| |||||| |||||||||| ||||| |||||||| ||| |||||||||| |||
Sbjct 736 AAAAGCTTGGGCTTCAATGACATCCAGTTTGGGTGCGAAGATGGCGGCAGGTCGGACAAG 795
Query 715 GAGTTTG-TATGTAAGATTCTAGGAGAAGCGATAAAAGCGGGTGCTACT-TCGGTGTGCA 772
|| ||| |||| ||||||||||||||||| |||||||| |||| ||| | |||| ||
Sbjct 796 GA-TTTCCTATGCAAGATTCTAGGAGAAGCCATAAAAGCCGGTGTTACGGT-GGTGACCA 853
Query 773 TCGCG-GACACGGTAGGGATCACCATGCCACATGAATTCGGAGAACTCGTGACCTT-TGT 830
||| | || ||||||||||||| |||||||||||||| ||| ||||||||||| || | |
Sbjct 854 TCG-GTGATACGGTAGGGATCAACATGCCACATGAATACGGGGAACTCGTGAC-TTATCT 911
Query 831 CAAAGCAAACACTCCAGGAATTGATGATGTTGTCTTCAGC-GTTCATTGTCACAACGACC 889
|||||||||||| || |||||||| ||||||||| || || |||||||||||||||||||
Sbjct 912 CAAAGCAAACACCCCTGGAATTGACGATGTTGTCGTC-GCTGTTCATTGTCACAACGACC 970
Query 890 TTGGTCTTGCTACCGCAAACACAATCGCTGCTGTATGTGCCGGAGTGAGACAATTCGAAG 949
|||||||||| ||||| ||| ||||||| | | || |||| |||| ||||| ||||||
Sbjct 971 TTGGTCTTGCAACCGCCAACTCAATCGCCGGTATACGTGCGGGAGCAAGACAGGTCGAAG 1030
Query 950 TAACAATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGG 1009
|||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 1031 TAACTATCAACGGAATTGGTGAAAGAAGTGGCAATGCGTCGCTTGAGGAGGTCGTGATGG 1090
Query 1010 CTTTGAAATGTCGAGGAGCATATCTTATGGATGGTGTTTACACAAGAATAGACACACGCC 1069
|||||||||||||||| |||||| | || |||| |||||||||| ||||||||||||||
Sbjct 1091 CTTTGAAATGTCGAGGGGCATATGTGATCAATGGGGTTTACACAAAAATAGACACACGCC 1150
Query 1070 AAATTATGGCTACTAGCAAGATGGTTCAAGAGCATACCGGCTTGTATGTTCAACCACATA 1129
|||| |||||||| |||||||||||||||||| | || ||||||||||||||| ||||||
Sbjct 1151 AAATCATGGCTACCAGCAAGATGGTTCAAGAGTACACGGGCTTGTATGTTCAAGCACATA 1210
Query 1130 AGCCAATAGTTGGAGAC-AACTGTTTTGTTCATGAAAGCGGCATTCACCAGGATGGAATA 1188
|||| |||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1211 AGCCCATAGTTGGAG-CGAACTGTTTTGTTCATGAGAGCGGCATTCATCAGGATGGAATA 1269
Query 1189 TTAAAAAATCGAAGTACATATGAGATTTTATCACCAGAAGATGTTGGAATCGTAAAATCG 1248
|| |||||| | ||||| |||||||| ||||||||||||||| |||| || ||||||||
Sbjct 1270 TTGAAAAATAGGAGTACTTATGAGATCTTATCACCAGAAGATATTGGGATTGTAAAATCT 1329
Query 1249 CAAAATTCAGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCTATAAAAGA-CAGGCT 1307
|||||||| ||| |||||||||||||||||||||||||||| ||| | ||||| | ||||
Sbjct 1330 CAAAATTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGTCACGCTGTGAAAGATC-GGCT 1388
Query 1308 TAAAGAGTTGGGATATGAAATCGATGATGAGAAATTCAACGAAATCTTCTCACGATTCAG 1367
|||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||
Sbjct 1389 GAAAGAGTTGGGATATGAACTCGATGATGAGAAATTGAACGCTGTCTTCTCACTATTCAG 1448
Query 1368 AGATTTAACCA 1378
|||||||||||
Sbjct 1449 AGATTTAACCA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5