BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326601

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23035.1 | Symbols:  | Putative membrane lipoprotein | chr5:...   278    2e-74


> AT5G23035.1 | Symbols:  | Putative membrane lipoprotein | chr5:7728020-7728455 
REVERSE LENGTH=267
Length=267

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 234/272 (86%), Gaps = 15/272 (6%)
 Strand=Plus/Plus

Query  1    ATGGTGTTGAGCAAAGTAGTTCTTCTTGCACTTCTGTTATCTCTTTCATGTTTGTGGGTA  60
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGTTGAGCAAAGTAGTTCTTCTTGCACTTCTGTTATCTCTTTCATGTTTGTGGGTA  60

Query  61   GCTAAAGCATCGGAA-AGAAGAACGAGAGTTAGTCAAGAAGTGAGAGATGCCAAAAAACA  119
            ||||||||||||||| | |||||||||||||||| ||| ||||||||| ||| ||| |||
Sbjct  61   GCTAAAGCATCGGAACA-AAGAACGAGAGTTAGTGAAGTAGTGAGAGAGGCCGAAATACA  119

Query  120  ACG-TGGAGGGCCTTGCACCGACGA-GAACACTTGCCACCAGATTTGTCCGGACTGTATA  177
             || ||||||||  ||||||||||| || || |||| || ||| ||||| ||| ||||| 
Sbjct  120  -CGATGGAGGGCAATGCACCGACGACGA-CATTTGCAACAAGAATTGTCTGGATTGTATT  177

Query  178  A-TCGCACAATGTATCTTCAAACAATGTGTTTGCTCTAAGTGTTTCCTCCCTCCT--T-C  233
              | | ||||||||||||| |||||||||||||||||||| ||||| ||||||||  | |
Sbjct  178  GCTAG-ACAATGTATCTTCCAACAATGTGTTTGCTCTAAGCGTTTCTTCCCTCCTAATTC  236

Query  234  ACAAGCAGCTTTTA-GTGTTAAAA--CATTAA  262
            |||| ||  ||| | |||||||||  ||||||
Sbjct  237  ACAACCAAATTT-ACGTGTTAAAAAACATTAA  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5