BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326692
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24040.1 | Symbols: | Protein of unknown function (DUF295) ... 1703 0.0
> AT5G24040.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:8126045-8127336 REVERSE LENGTH=1122
Length=1122
Score = 1703 bits (922), Expect = 0.0
Identities = 1057/1123 (94%), Gaps = 6/1123 (1%)
Strand=Plus/Plus
Query 1 ATGGTAAAATGGTCGGACTTGCCACCGGAGATTCTCCA-TTCGATCTCCCTAAAAATCGA 59
||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||
Sbjct 1 ATGGTAAAATGGTCGGAGTTGCCACCGGAGATTCTCCACTT-GATCTCCCTTAAAATCGA 59
Query 60 CAATCCCTTTGATCTGATCCACTTTCGGTCGGTTTGTTCCTTTTGGCGATCTTCTAGTCT 119
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 60 CAATCCCTTTGATCTGATCCACTTTCGGTCAGTTTGTTCCTTTTGGCGATCCTCTAGTCT 119
Query 120 CCTCAAATTCAGACACATGACATCACTTAGATGTCCTCTTCCCCTTGATCCCGGCGGTTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCTCAAATTCAGACACATGACATCACTTAGATGTCCTCTTCCCCTTGATCCCGGCGGTTG 179
Query 180 TGGTGATGATTGCCATATCTTGAGCAGCCGTGTTTACCTTCTCAAGTCTCCTAATCGCGA 239
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct 180 TGGTGATGATTGCCATATCTTGAGCAGCCGTGTCTACCTTCTCAAGTGTCCTAATCGTGA 239
Query 240 CCGTCCCCAATATTGGTTGTTTAAGCTACAAGCAAAAGAGAATGGAGAAGTTGTTCTACA 299
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 240 CCGTCCCCAATATTGGATGTTTAAACTACAAGCTAAAGAGAATGGAGAAGTTGTTCTACA 299
Query 300 TAGTTTGTTCTTAAGAAGACACTCCTCTGCGTATGGATGCTTGTATCCAAGTCTGTC-AC 358
||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 300 TAGTTTGTTCTTAAGAAGAAACTCCTCTGCGTATGGATGCTTGTATCCAAGTCTATCTA- 358
Query 359 TTGATTTGCTTAATTGTCAAATCTTTGAGCTAGCGAAAGAACATGTGGCATGTTACAGCG 418
|||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 359 TTGATTTGCTCAATTGTCAAATCTTTGAGCTAGCGCAAGAACATGTGGCTTGTTACAGCG 418
Query 419 AATGGTCTGAATTATTCGAATGCATTTCAAAATGTGAAGAACGTATCGGCTTTATGGGTT 478
|||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 AATGGTTTGAATTATTTGAATGCATTTCAAAATGTGAAGAACGTATCGGATTTATGGGTC 478
Query 479 TAAGCACAGAGAACAACGAATATATGATTCTAGGGAAGCTCTCATTCAATGGTCTCGCAA 538
||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAAACAGAGAGAAAAACGAATATATGATTCTAGGGAAGCTCTCATTCAATGGTCTCGCAA 538
Query 539 TGTTTAGGTCAGTCGATAAGCGTTGGACTGAGCTTGGGATAAT-CTATGATTCATTTTTT 597
||| ||||||||||||||| |||||||||||||| | ||||| | ||||||||||||
Sbjct 539 TGTATAGGTCAGTCGATAACCGTTGGACTGAGCTCGAGATAACACCC-GATTCATTTTTT 597
Query 598 GAAGGGATAGTTCCATTTAAAGGTAAGTTTTACGCAATAGATCGCACTGGAAAAACAACA 657
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 598 GAAGGGATAGTTCCATTTAAAGGCAAGTTTTACGCGATAGATCGCACCGGAAAAACAACA 657
Query 658 GTGGTAGAGCCAACTCTAGAAGTGAATACATTTCAGCGGTCAAGGCCTTGTGATAAGACA 717
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 GTGGTAGATCCAACACTAGAAGTGAATACATTTCAGCGGTCAAGACCTTGTGATAAGACA 717
Query 718 AGGAAACGTTGGCTTGTAATGTCAGGGGACAAACTCATACTCGTAGAGATGTGCACAAAG 777
||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 718 AGGAAACGTTGGCTTTTAATGACAGGGGACAAACTCATTCTCGTAGAGATGTGCACAAAG 777
Query 778 AGCCGATACGATTTTCACATACCAAACATCCGTGAGAAAAAGATATGGTTCGAAATATCA 837
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 AGCCGATACGATTTTCACATACCAAATATCCGTGAGAAAAAGATATGGTTCGAAATATCA 837
Query 838 GAGTTAAACGAGGAAAGAAACGATTGGGATCAAGTGGAAGATATGGATGGTCGCGTGTTG 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 838 GAGTTAAACGAGGAAAGAAACGATTGGGATCAAGTGGAAGATATGGACGGTCGTGTGTTG 897
Query 898 TTCTTGGAGCATTATTGCAGTTTCTCATGCTTGGCTACTGAGATTCCGGGGTTTAGGGCT 957
||||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 898 TTCTTGGAGCATTATTGTACCTTCTCATGCTTGGCTACTGAAATTCCAGGGTTTAGGGCT 957
Query 958 AACTCTATAATCTTCATGGACTTGTGGGGAGGATCTAACTCGTATGAACATGAAAGCATT 1017
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 958 AACTCTATAATCTTCATGGACTTGTGGGGAGGATCTAACTCATATGAACTTGAAAGCATT 1017
Query 1018 CTCGTATATGAATTTGATGAGCAAGGAATAAGAACTTTAATAGATAAACAGGAGTATATA 1077
||||| |||||||| ||||| |||| ||||| |||||| ||||||| ||||||||||
Sbjct 1018 CTCGTGTATGAATTCAATGAGAAAGGCGTAAGATCTTTAAGAGATAAATTGGAGTATATA 1077
Query 1078 GAGCTGTTTCCATCTCCCCCTGGTTGGGTAATCTCCAACAGAT 1120
||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1078 GAGCTGTTTCCATTTCCCCCTGGTTGGGTAATCTCCAACGGAT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5