BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326701
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:8... 2237 0.0
AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:81... 508 5e-143
> AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:8164347-8167673
REVERSE LENGTH=1755
Length=1755
Score = 2237 bits (1211), Expect = 0.0
Identities = 1391/1477 (94%), Gaps = 16/1477 (1%)
Strand=Plus/Plus
Query 1 ATGACTTACGCGTGGTTATGGACGCTTCTCGCCTTCGTTCTGACATGGATGGTTTTACAC 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 5 ATGACTTACGCGTGGTTATGGACGCTTCTCGCCTTTGTTCTGACATGGATGGTTTTTCAC 64
Query 61 CTCATCAAGATGAAGAAGGCGGCAACCGAAGATGTAGAGGCAGAGGCAGAAG-AGAGATC 119
|||||||||||||||||||||||||||| |||| ||||||| |||||||||| | |||
Sbjct 65 CTCATCAAGATGAAGAAGGCGGCAACCGGAGATTTAGAGGCCGAGGCAGAAGCA-AGAAG 123
Query 120 AGATGGTGCCACTGATGTCATCATTGTTGGAGCGGGTGTTGCAGGCGCTTCTCTTGCTTA 179
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 AGATGGTGCAACGGATGTCATCATTGTTGGGGCGGGTGTTGCAGGCGCTTCTCTTGCTTA 183
Query 180 TGCTCTT-GCGAAGGATGGACGACGAGTTCATGTGATAGAGAGGGACTTGAAAGAGCCAC 238
|||| || || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 184 TGCT-TTAGCTAAGGATGGACGACGAGTACATGTGATAGAGAGGGACTTAAAAGAGCCAC 242
Query 239 AAAGATTCATGGGAGAGCTTATGCAAGCGGGAGGCCGCTTCATGTTAGCCCAGCTTGGCC 298
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 243 AAAGATTCATGGGAGAGCTGATGCAAGCGGGAGGTCGCTTCATGTTAGCCCAGCTTGGCC 302
Query 299 TCGAAGATTGTTTGGAGGAGATAGACGCTCAAGAAGCCAAGTCCTTGGCAATTTACAAGG 358
||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||
Sbjct 303 TCGAAGATTGTTTGGAGGACATAGACGCACAAGAAGCGAAGTCCTTGGCAATATACAAGG 362
Query 359 ACGGAAAACACGCGACATTGCCTTTTCCAGATGACAAGAAG-TTTCCTCATGAACCAGTC 417
| |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 363 ATGGAAAACACGCGACATTGCCTTTTCCAGATGACAAG-AGTTTTCCTCATGAGCCAGTA 421
Query 418 GGTAGACTTTTACGTAATGGCCGTCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 477
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 422 GGTAGACTCTTACGTAATGGTCGGCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 481
Query 478 AGCAATGTACAATTAGAAGAAGGAATGGCGAAGTCTTTAATTGAAGAA-AATGGAGTGGT 536
|||||||| |||||||||||||||| | ||||||||||||||||||| || ||||||||
Sbjct 482 AGCAATGTTCAATTAGAAGAAGGAACAGTGAAGTCTTTAATTGAAGAAGAA-GGAGTGGT 540
Query 537 TAAAGGAGTGACATACAAGAACAGCGCAGGCGAGGAAACAACGGCCTTTGCACCTCTCAC 596
||||||||||||||||| || ||||||||||| |||| |||||||||||||||||| ||
Sbjct 541 CAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAATAACGGCCTTTGCACCTCTTAC 600
Query 597 TGTCGTATGCGATGGTTGTTATTCAAACCTTCGCCGGTCACTCGTGGATAATTCTGAGGA 656
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 601 TGTCGTATGCGATGGTTGTTATTCGAACCTTCGTCGGTCACTCGTGGATAATACTGAGGA 660
Query 657 AGTGCTCTCGTACATGGTGGGTTATGTCACGAAGAATAGCCGACTTGAAGATCCACATAG 716
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 661 AGTCCTCTCGTACATGGTGGGTTACGTCACGAAGAATAGCCGACTTGAAGATCCCCATAG 720
Query 717 TCTACATCTT-ATATTTTCTAAACCTTTGGTCTGTGTTATATATCAAATAACCAGTGATG 775
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 TCTACAT-TTGATATTTTCTAAACCTTTGGTTTGTGTTATATATCAAATAACCAGTGATG 779
Query 776 AAGTTCGTTGTGTAGCCGAAGTTCCCGCTGATAGTATTCCTTCTAT-TGCGAATGGCGAA 834
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 780 AAGTTCGTTGTGTTGCCGAAGTTCCCGCTGATAGTATTCCTTCTATAT-CGAATGGTGAA 838
Query 835 ATGTCTACCTTCCTCAAGAAATCAATGGCTCCTCAGATACCTGCAACTGGAAATCTTCGT 894
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 ATGTCTACCTTCCTCAAGAAATCAATGGCTCCTCAGATACCTGAAACTGGAAATCTTCGG 898
Query 895 GAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAACAGCGACAAAA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 GAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAACAGCGACGAAA 958
Query 955 AGTATGTCAGCAAGATTGTGTGATAAGAGAGGAGTGATTGTGTTGGGAGATGCATTCAAT 1014
||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 AGTATGTCATCGAGATTGTGTGATAAAAGAGGAGTGATTGTGTTGGGAGATGCATTCAAT 1018
Query 1015 ATGCGTCATCCTATAATCGCGTCAGGGATGATGGTTGCTCTCTCGGACATTTGCATTCTA 1074
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1019 ATGCGTCATCCTATAATCGCGTCAGGAATGATGGTTGCACTCTCGGACATTTGCATTCTA 1078
Query 1075 CGCAATCTACTCAGACCATTACCTAACCTCGGCAATACTAAGAAGGTCTCTGATATTGTC 1134
|||||||| |||| |||||| ||||||||| ||||||||||||| ||||||||| |||||
Sbjct 1079 CGCAATCTTCTCAAACCATTGCCTAACCTCAGCAATACTAAGAAAGTCTCTGATCTTGTC 1138
Query 1135 AAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTAAACACGCTGGCTAGTATC 1194
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1139 AAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTGAACACGCTCGCGAGTATC 1198
Query 1195 TTTTCGCAAGTGCTTGTTGCTACAACGGACGAAGCAAGAGAGGGAATGCGACAAGGCTGC 1254
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1199 TTTTCACAAGTGCTTGTTGCTACAACAGACGAAGCAAGAGAGGGAATGCGACAAGGCTGC 1258
Query 1255 TTCAATTACCTAGCTCGTGGAGATTTTAAAACA-GCCGGAATGATGACTATTCTCGGAGG 1313
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1259 TTCAATTACCTAGCTCGTGGAGATTTTAAAACAAGG-GGATTGATGACTATTCTCGGAGG 1317
Query 1314 CATGAACCCTCACCCCCTTACTCTAGTCCTTCATCTTGTAGCCATCACCCTTACGTCCAT 1373
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CATGAACCCTCACCCTCTTACTCTAGTCCTTCATCTTGTAGCCATCACCCTTACGTCCAT 1377
Query 1374 GGGCCACTTGCTTTCTCCCTTTCCTTCGCCT-GTTCGCTTTTGGCATAGCCTCAGACTTT 1432
|||||||||||| ||||| |||||||||||| || ||||||||||||||||||||| ||
Sbjct 1378 GGGCCACTTGCTCTCTCCGTTTCCTTCGCCTCGT-CGCTTTTGGCATAGCCTCAGAATTC 1436
Query 1433 TTGCCTGGGCTTTGCAAATGTTGGGTGCACATTTAGT 1469
|||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTGCCTGGGCTTTGCAAATGTTGGGTGCACATTTAGT 1473
> AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:8183075-8186640
REVERSE LENGTH=1809
Length=1809
Score = 508 bits (275), Expect = 5e-143
Identities = 1104/1492 (74%), Gaps = 105/1492 (7%)
Strand=Plus/Plus
Query 16 TTATGGACGCTT-CTCGCCTTCGTTCTGACATGGATGGTTTTAC-ACCTCATCAAGATGA 73
||||||||| || |||||||||| ||||| |||| ||| || | |||| | ||| ||||
Sbjct 61 TTATGGACG-TTAGTCGCCTTCGTGCTGACGTGGACGGTGTT-CTACCTTACCAACATGA 118
Query 74 AGAAGGCGGCAACCGAAGAT-G-TAGAGGCAGAGGCAGAAGA-GAGATCAGATGGTGCCA 130
||||| ||| | || | | | | || | | ||| || || | | ||| |||||
Sbjct 119 AGAAGAAGGCGA-CGGATTTGGCT-GATACGGTGGCTGAGGATCA-AAAAGACGGTGCTG 175
Query 131 CTGATGTCATCATTGTTGGAGCGGGTGTTGCAGGCGCTTCTCTTGCTTATGCTCTTGCGA 190
|||| ||||| || || || || ||||| | || | |||| || ||||||||||| |
Sbjct 176 CTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGCTCTCGCATATGCTCTTGCTA 235
Query 191 AGGATGGACGACGAGTTCATGTGATAGAGAGGGACTTGAAAGAGCCACAAAGATTCATGG 250
||||||| || ||||| |||||||| ||||||||| ||| ||| ||| ||||| | ||||
Sbjct 236 AGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAGAGAACCAGAAAGAATGATGG 295
Query 251 GAGAGCTTATGCAAGCGGGAGGCCG-CTTCATG-TTAGCCCAGCTTGGCC-TCGAAGATT 307
| ||| |||||||| | || || || | ||||| || | | ||||||| || ||||||
Sbjct 296 GTGAGTTTATGCAACCTGGCGGACGAC-TCATGCTT-TCTAAACTTGGCCTTC-AAGATT 352
Query 308 GTTTGGAGGAGATAGACGCTCAAG-AAGCCAAGTCCTTGGCAATTTACAAGGACGGAAAA 366
| ||||| || ||||| || | || |||||| | |||||| |||| || || ||||||
Sbjct 353 GCTTGGAAGACATAGATGCAC-AGAAAGCCACGGGTTTGGCAGTTTATAAAGATGGAAAA 411
Query 367 CACGC-GACATTGCCTTTTCCA---GATGACAAGAAGTTTCCTCATGAACCAGTC-GGTA 421
| || ||| ||||||||| ||| |||| || ||| || ||||||| || | |
Sbjct 412 GAAGCAGAC-GCACCTTTTCCAGTGGATAACAACAATTTTTCTTATGAACC-TTCTGCTC 469
Query 422 GA-CTTTTACGTAATGGCCG-TCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTTAG 479
|| ||||| | |||||||| | | || |||| | || | ||| || |||||||
Sbjct 470 GATCTTTT-CACAATGGCCGAT-TCGTCCAACAACTGCGTCGAAAGGCTTTTTCTCTTTC 527
Query 480 CAATGTACAATTAGAAGAAGGAATGGCGAAGTCTTTAATTGAAGAAAATGGAGTGGTTAA 539
|||||| | | |||||||||| || |||||||||| | |||||||| |||||||| ||
Sbjct 528 CAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTACTAGAAGAAAAAGGAGTGGTCAA 587
Query 540 AGGAGTGACATACAAGAACAGCGCAGGCGAGGAAACAACGGCCTTTGCACCTCTCACTGT 599
|||||||||||||||||| | | |||||| |||||||| ||||| ||||||||||||||
Sbjct 588 AGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGGCACCTCTCACTGT 647
Query 600 CGTATGCGATGGTTGTTATTCAAACCTTCGCCGGTCAC-T--CG-TG--GATAATTCTGA 653
|||||||| ||||| || ||||||||||| ||||| | | | || | ||| ||||
Sbjct 648 GGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATGACAACAATGCTGA 707
Query 654 GGAAGTGCTCTCGTACATGGTGGGTTATGTCACGAAGAATAGCCGACTTGAAG-ATCC-A 711
| | | | |||||||| || ||||| || | |||||| | || ||||||| | || |
Sbjct 708 -G-A-TTATGTCGTACATAGTTGGTTACATCTCAAAGAATTGTCGGCTTGAAGAACCCGA 764
Query 712 CATAGTCTACATCTT-ATATTTTCTAAACC-T-TTGGTCTGTGTTATATATCAAATAACC 768
| || ||||| ||| ||||| |||||||| | || || | |||| ||||||| |
Sbjct 765 -AAAG-CTACA-CTTGATATTGTCTAAACCATCTT--TCACCATGGTATACCAAATAAGC 819
Query 769 AGTGA-TGAAGTTCGTTGT-GTAGCCGAAGTTC-CCGCTGATAGTATTCCTTCTATTGCG 825
|| | ||| ||||||||| || || |||| || | || | | |||||||||||||
Sbjct 820 AG-CACTGACGTTCGTTGTGGT-TTTGAGGTTCTCC-CCGAAAATTTTCCTTCTATTGCA 876
Query 826 AATGGCGAAATGTCTACCTTCCTCAAGAAAT-CAATGGCTCCTCAGATACCTGCAACTGG 884
||||| ||||||||||| ||| | ||| ||| | || | ||||||| ||||| | |
Sbjct 877 AATGGTGAAATGTCTACTTTCATGAAG-AATACTATAGTTCCTCAGGTACCT-C--C--- 929
Query 885 AAATCTTCGTGAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAAC 944
||| || || | |||||||||||||| ||||| | ||| | || | ||||||
Sbjct 930 AAAACTCCGCAAAATATTTTTGAAAGGTATAGATG-AGG--GAGCACACATAAAA-GTGG 985
Query 945 AG-CGACAAAAAGTATGTCAGCAAGATTGTGTGATAAGAGAGGAGTGATTGTGTTGGGAG 1003
| || |||| | ||| || | | || | | |||| ||| |||||||| |||||||
Sbjct 986 TGCCGGCAAAGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAG 1045
Query 1004 ATGCATTCAATATGCGTCATCCTA-TAATCGCGTCAGGGATGATGGTTGCT-CTCTCGGA 1061
|||||||||||||||||||||| | | | || || || ||||||||| | || |||||
Sbjct 1046 ATGCATTCAATATGCGTCATCC-AGTTGTTGCATCTGGAATGATGGTTT-TACTGTCGGA 1103
Query 1062 CATT-TGCATTCTACGCAATCTACT-CAGACCATTAC-CTAACCTCGGCAATACTAAGAA 1118
|||| | |||||||||| ||| || ||| |||||| | ||||||||| || | || ||
Sbjct 1104 CATTCT-CATTCTACGCCGTCTTCTTCAG-CCATTAAGC-AACCTCGGCGATGCAAACAA 1160
Query 1119 GGTCTCTGATA-TTGTCAAGTCCTTTTAC-ATCATCCGCAAGCCAATGTCAGCGACCGTA 1176
||||| || | || |||| |||||||| || ||||||||||||||||| ||||| ||
Sbjct 1161 AGTCTCAGA-AGTTATCAATTCCTTTTATGAT-ATCCGCAAGCCAATGTCGGCGACGGTT 1218
Query 1177 AACACGCTGGCTAGTATC-TTTTCGCAAGTGCTTGTTGC-TACAACGGACGAAGCAAGAG 1234
||||| ||| | | | ||||| ||||| || ||| | ||||||| ||||||| ||
Sbjct 1219 AACACATTGGGAAATG-CATTTTCTCAAGTACTAATTGGAT-CAACGGATGAAGCAAAAG 1276
Query 1235 AGGGAATGCGACAAGGCTG-CT-TCAATTACCTA-GCTCGTGGAGATTTTAAAACAGCC- 1290
||| |||| |||| || || || | | |||||| | | |||| | ||| || | |
Sbjct 1277 AGGCAATGAGACAGGG-TGTCTATGA-TTACCTTTG-TAGTGGCGGGTTTCGTAC-GTCA 1332
Query 1291 GGAATGATGACTATTCTCGGAGGCATGAACCCTCACCCCCT-TACTCTAGTCCT-TCATC 1348
|| |||||| || | ||||| |||||||| |||| || || | |||| ||| | |||||
Sbjct 1333 GGGATGATGGCTCTGCTCGGCGGCATGAATCCTCGTCCTCTCT-CTCTCGTC-TATCATC 1390
Query 1349 TT-GTAGCCATCACCCT-TACGTCCATGGGCCA-CTTGCTTTCTCCCTTTCCTTCGCCTG 1405
|| || |||||||| || | | ||||| ||||| || ||| ||||| ||||| || ||
Sbjct 1391 TTTGT-GCCATCACTCTATCC-TCCATTGGCCAACT-GCTCTCTCCATTTCCCTCTCCCC 1447
Query 1406 TTCGCTTTTGGCATAGCCTCA-GACTTTTTGCCTGGGCTTTGCAAATGTTGG 1456
||||| ||||||||||||||| | ||||||| | ||| || |||||||||
Sbjct 1448 TTCGCATTTGGCATAGCCTCAAG-CTTTTTGGTTTGGCCATGAAAATGTTGG 1498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5