BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326701 Length=1512 Score E Sequences producing significant alignments: (Bits) Value AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:8... 2237 0.0 AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:81... 508 5e-143 > AT5G24140.1 | Symbols: SQP2 | squalene monooxygenase 2 | chr5:8164347-8167673 REVERSE LENGTH=1755 Length=1755 Score = 2237 bits (1211), Expect = 0.0 Identities = 1391/1477 (94%), Gaps = 16/1477 (1%) Strand=Plus/Plus Query 1 ATGACTTACGCGTGGTTATGGACGCTTCTCGCCTTCGTTCTGACATGGATGGTTTTACAC 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 5 ATGACTTACGCGTGGTTATGGACGCTTCTCGCCTTTGTTCTGACATGGATGGTTTTTCAC 64 Query 61 CTCATCAAGATGAAGAAGGCGGCAACCGAAGATGTAGAGGCAGAGGCAGAAG-AGAGATC 119 |||||||||||||||||||||||||||| |||| ||||||| |||||||||| | ||| Sbjct 65 CTCATCAAGATGAAGAAGGCGGCAACCGGAGATTTAGAGGCCGAGGCAGAAGCA-AGAAG 123 Query 120 AGATGGTGCCACTGATGTCATCATTGTTGGAGCGGGTGTTGCAGGCGCTTCTCTTGCTTA 179 ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 124 AGATGGTGCAACGGATGTCATCATTGTTGGGGCGGGTGTTGCAGGCGCTTCTCTTGCTTA 183 Query 180 TGCTCTT-GCGAAGGATGGACGACGAGTTCATGTGATAGAGAGGGACTTGAAAGAGCCAC 238 |||| || || ||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 184 TGCT-TTAGCTAAGGATGGACGACGAGTACATGTGATAGAGAGGGACTTAAAAGAGCCAC 242 Query 239 AAAGATTCATGGGAGAGCTTATGCAAGCGGGAGGCCGCTTCATGTTAGCCCAGCTTGGCC 298 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 243 AAAGATTCATGGGAGAGCTGATGCAAGCGGGAGGTCGCTTCATGTTAGCCCAGCTTGGCC 302 Query 299 TCGAAGATTGTTTGGAGGAGATAGACGCTCAAGAAGCCAAGTCCTTGGCAATTTACAAGG 358 ||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||| Sbjct 303 TCGAAGATTGTTTGGAGGACATAGACGCACAAGAAGCGAAGTCCTTGGCAATATACAAGG 362 Query 359 ACGGAAAACACGCGACATTGCCTTTTCCAGATGACAAGAAG-TTTCCTCATGAACCAGTC 417 | |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 363 ATGGAAAACACGCGACATTGCCTTTTCCAGATGACAAG-AGTTTTCCTCATGAGCCAGTA 421 Query 418 GGTAGACTTTTACGTAATGGCCGTCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 477 |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 422 GGTAGACTCTTACGTAATGGTCGGCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTT 481 Query 478 AGCAATGTACAATTAGAAGAAGGAATGGCGAAGTCTTTAATTGAAGAA-AATGGAGTGGT 536 |||||||| |||||||||||||||| | ||||||||||||||||||| || |||||||| Sbjct 482 AGCAATGTTCAATTAGAAGAAGGAACAGTGAAGTCTTTAATTGAAGAAGAA-GGAGTGGT 540 Query 537 TAAAGGAGTGACATACAAGAACAGCGCAGGCGAGGAAACAACGGCCTTTGCACCTCTCAC 596 ||||||||||||||||| || ||||||||||| |||| |||||||||||||||||| || Sbjct 541 CAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAATAACGGCCTTTGCACCTCTTAC 600 Query 597 TGTCGTATGCGATGGTTGTTATTCAAACCTTCGCCGGTCACTCGTGGATAATTCTGAGGA 656 |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| Sbjct 601 TGTCGTATGCGATGGTTGTTATTCGAACCTTCGTCGGTCACTCGTGGATAATACTGAGGA 660 Query 657 AGTGCTCTCGTACATGGTGGGTTATGTCACGAAGAATAGCCGACTTGAAGATCCACATAG 716 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 661 AGTCCTCTCGTACATGGTGGGTTACGTCACGAAGAATAGCCGACTTGAAGATCCCCATAG 720 Query 717 TCTACATCTT-ATATTTTCTAAACCTTTGGTCTGTGTTATATATCAAATAACCAGTGATG 775 ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 721 TCTACAT-TTGATATTTTCTAAACCTTTGGTTTGTGTTATATATCAAATAACCAGTGATG 779 Query 776 AAGTTCGTTGTGTAGCCGAAGTTCCCGCTGATAGTATTCCTTCTAT-TGCGAATGGCGAA 834 ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||| Sbjct 780 AAGTTCGTTGTGTTGCCGAAGTTCCCGCTGATAGTATTCCTTCTATAT-CGAATGGTGAA 838 Query 835 ATGTCTACCTTCCTCAAGAAATCAATGGCTCCTCAGATACCTGCAACTGGAAATCTTCGT 894 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 839 ATGTCTACCTTCCTCAAGAAATCAATGGCTCCTCAGATACCTGAAACTGGAAATCTTCGG 898 Query 895 GAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAACAGCGACAAAA 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 899 GAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAACAGCGACGAAA 958 Query 955 AGTATGTCAGCAAGATTGTGTGATAAGAGAGGAGTGATTGTGTTGGGAGATGCATTCAAT 1014 ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 959 AGTATGTCATCGAGATTGTGTGATAAAAGAGGAGTGATTGTGTTGGGAGATGCATTCAAT 1018 Query 1015 ATGCGTCATCCTATAATCGCGTCAGGGATGATGGTTGCTCTCTCGGACATTTGCATTCTA 1074 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1019 ATGCGTCATCCTATAATCGCGTCAGGAATGATGGTTGCACTCTCGGACATTTGCATTCTA 1078 Query 1075 CGCAATCTACTCAGACCATTACCTAACCTCGGCAATACTAAGAAGGTCTCTGATATTGTC 1134 |||||||| |||| |||||| ||||||||| ||||||||||||| ||||||||| ||||| Sbjct 1079 CGCAATCTTCTCAAACCATTGCCTAACCTCAGCAATACTAAGAAAGTCTCTGATCTTGTC 1138 Query 1135 AAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTAAACACGCTGGCTAGTATC 1194 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 1139 AAGTCCTTTTACATCATCCGCAAGCCAATGTCAGCGACCGTGAACACGCTCGCGAGTATC 1198 Query 1195 TTTTCGCAAGTGCTTGTTGCTACAACGGACGAAGCAAGAGAGGGAATGCGACAAGGCTGC 1254 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1199 TTTTCACAAGTGCTTGTTGCTACAACAGACGAAGCAAGAGAGGGAATGCGACAAGGCTGC 1258 Query 1255 TTCAATTACCTAGCTCGTGGAGATTTTAAAACA-GCCGGAATGATGACTATTCTCGGAGG 1313 ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| Sbjct 1259 TTCAATTACCTAGCTCGTGGAGATTTTAAAACAAGG-GGATTGATGACTATTCTCGGAGG 1317 Query 1314 CATGAACCCTCACCCCCTTACTCTAGTCCTTCATCTTGTAGCCATCACCCTTACGTCCAT 1373 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 CATGAACCCTCACCCTCTTACTCTAGTCCTTCATCTTGTAGCCATCACCCTTACGTCCAT 1377 Query 1374 GGGCCACTTGCTTTCTCCCTTTCCTTCGCCT-GTTCGCTTTTGGCATAGCCTCAGACTTT 1432 |||||||||||| ||||| |||||||||||| || ||||||||||||||||||||| || Sbjct 1378 GGGCCACTTGCTCTCTCCGTTTCCTTCGCCTCGT-CGCTTTTGGCATAGCCTCAGAATTC 1436 Query 1433 TTGCCTGGGCTTTGCAAATGTTGGGTGCACATTTAGT 1469 ||||||||||||||||||||||||||||||||||||| Sbjct 1437 TTGCCTGGGCTTTGCAAATGTTGGGTGCACATTTAGT 1473 > AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:8183075-8186640 REVERSE LENGTH=1809 Length=1809 Score = 508 bits (275), Expect = 5e-143 Identities = 1104/1492 (74%), Gaps = 105/1492 (7%) Strand=Plus/Plus Query 16 TTATGGACGCTT-CTCGCCTTCGTTCTGACATGGATGGTTTTAC-ACCTCATCAAGATGA 73 ||||||||| || |||||||||| ||||| |||| ||| || | |||| | ||| |||| Sbjct 61 TTATGGACG-TTAGTCGCCTTCGTGCTGACGTGGACGGTGTT-CTACCTTACCAACATGA 118 Query 74 AGAAGGCGGCAACCGAAGAT-G-TAGAGGCAGAGGCAGAAGA-GAGATCAGATGGTGCCA 130 ||||| ||| | || | | | | || | | ||| || || | | ||| ||||| Sbjct 119 AGAAGAAGGCGA-CGGATTTGGCT-GATACGGTGGCTGAGGATCA-AAAAGACGGTGCTG 175 Query 131 CTGATGTCATCATTGTTGGAGCGGGTGTTGCAGGCGCTTCTCTTGCTTATGCTCTTGCGA 190 |||| ||||| || || || || ||||| | || | |||| || ||||||||||| | Sbjct 176 CTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGCTCTCGCATATGCTCTTGCTA 235 Query 191 AGGATGGACGACGAGTTCATGTGATAGAGAGGGACTTGAAAGAGCCACAAAGATTCATGG 250 ||||||| || ||||| |||||||| ||||||||| ||| ||| ||| ||||| | |||| Sbjct 236 AGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAGAGAACCAGAAAGAATGATGG 295 Query 251 GAGAGCTTATGCAAGCGGGAGGCCG-CTTCATG-TTAGCCCAGCTTGGCC-TCGAAGATT 307 | ||| |||||||| | || || || | ||||| || | | ||||||| || |||||| Sbjct 296 GTGAGTTTATGCAACCTGGCGGACGAC-TCATGCTT-TCTAAACTTGGCCTTC-AAGATT 352 Query 308 GTTTGGAGGAGATAGACGCTCAAG-AAGCCAAGTCCTTGGCAATTTACAAGGACGGAAAA 366 | ||||| || ||||| || | || |||||| | |||||| |||| || || |||||| Sbjct 353 GCTTGGAAGACATAGATGCAC-AGAAAGCCACGGGTTTGGCAGTTTATAAAGATGGAAAA 411 Query 367 CACGC-GACATTGCCTTTTCCA---GATGACAAGAAGTTTCCTCATGAACCAGTC-GGTA 421 | || ||| ||||||||| ||| |||| || ||| || ||||||| || | | Sbjct 412 GAAGCAGAC-GCACCTTTTCCAGTGGATAACAACAATTTTTCTTATGAACC-TTCTGCTC 469 Query 422 GA-CTTTTACGTAATGGCCG-TCTGGTACAACGTTTACGCCAAAAAGCAGCTTCTCTTAG 479 || ||||| | |||||||| | | || |||| | || | ||| || ||||||| Sbjct 470 GATCTTTT-CACAATGGCCGAT-TCGTCCAACAACTGCGTCGAAAGGCTTTTTCTCTTTC 527 Query 480 CAATGTACAATTAGAAGAAGGAATGGCGAAGTCTTTAATTGAAGAAAATGGAGTGGTTAA 539 |||||| | | |||||||||| || |||||||||| | |||||||| |||||||| || Sbjct 528 CAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTACTAGAAGAAAAAGGAGTGGTCAA 587 Query 540 AGGAGTGACATACAAGAACAGCGCAGGCGAGGAAACAACGGCCTTTGCACCTCTCACTGT 599 |||||||||||||||||| | | |||||| |||||||| ||||| |||||||||||||| Sbjct 588 AGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGGCACCTCTCACTGT 647 Query 600 CGTATGCGATGGTTGTTATTCAAACCTTCGCCGGTCAC-T--CG-TG--GATAATTCTGA 653 |||||||| ||||| || ||||||||||| ||||| | | | || | ||| |||| Sbjct 648 GGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATGACAACAATGCTGA 707 Query 654 GGAAGTGCTCTCGTACATGGTGGGTTATGTCACGAAGAATAGCCGACTTGAAG-ATCC-A 711 | | | | |||||||| || ||||| || | |||||| | || ||||||| | || | Sbjct 708 -G-A-TTATGTCGTACATAGTTGGTTACATCTCAAAGAATTGTCGGCTTGAAGAACCCGA 764 Query 712 CATAGTCTACATCTT-ATATTTTCTAAACC-T-TTGGTCTGTGTTATATATCAAATAACC 768 | || ||||| ||| ||||| |||||||| | || || | |||| ||||||| | Sbjct 765 -AAAG-CTACA-CTTGATATTGTCTAAACCATCTT--TCACCATGGTATACCAAATAAGC 819 Query 769 AGTGA-TGAAGTTCGTTGT-GTAGCCGAAGTTC-CCGCTGATAGTATTCCTTCTATTGCG 825 || | ||| ||||||||| || || |||| || | || | | ||||||||||||| Sbjct 820 AG-CACTGACGTTCGTTGTGGT-TTTGAGGTTCTCC-CCGAAAATTTTCCTTCTATTGCA 876 Query 826 AATGGCGAAATGTCTACCTTCCTCAAGAAAT-CAATGGCTCCTCAGATACCTGCAACTGG 884 ||||| ||||||||||| ||| | ||| ||| | || | ||||||| ||||| | | Sbjct 877 AATGGTGAAATGTCTACTTTCATGAAG-AATACTATAGTTCCTCAGGTACCT-C--C--- 929 Query 885 AAATCTTCGTGAGATATTTTTGAAAGGCATAGAGGAAGGATTACCAGAGATAAAATCAAC 944 ||| || || | |||||||||||||| ||||| | ||| | || | |||||| Sbjct 930 AAAACTCCGCAAAATATTTTTGAAAGGTATAGATG-AGG--GAGCACACATAAAA-GTGG 985 Query 945 AG-CGACAAAAAGTATGTCAGCAAGATTGTGTGATAAGAGAGGAGTGATTGTGTTGGGAG 1003 | || |||| | ||| || | | || | | |||| ||| |||||||| ||||||| Sbjct 986 TGCCGGCAAAGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAG 1045 Query 1004 ATGCATTCAATATGCGTCATCCTA-TAATCGCGTCAGGGATGATGGTTGCT-CTCTCGGA 1061 |||||||||||||||||||||| | | | || || || ||||||||| | || ||||| Sbjct 1046 ATGCATTCAATATGCGTCATCC-AGTTGTTGCATCTGGAATGATGGTTT-TACTGTCGGA 1103 Query 1062 CATT-TGCATTCTACGCAATCTACT-CAGACCATTAC-CTAACCTCGGCAATACTAAGAA 1118 |||| | |||||||||| ||| || ||| |||||| | ||||||||| || | || || Sbjct 1104 CATTCT-CATTCTACGCCGTCTTCTTCAG-CCATTAAGC-AACCTCGGCGATGCAAACAA 1160 Query 1119 GGTCTCTGATA-TTGTCAAGTCCTTTTAC-ATCATCCGCAAGCCAATGTCAGCGACCGTA 1176 ||||| || | || |||| |||||||| || ||||||||||||||||| ||||| || Sbjct 1161 AGTCTCAGA-AGTTATCAATTCCTTTTATGAT-ATCCGCAAGCCAATGTCGGCGACGGTT 1218 Query 1177 AACACGCTGGCTAGTATC-TTTTCGCAAGTGCTTGTTGC-TACAACGGACGAAGCAAGAG 1234 ||||| ||| | | | ||||| ||||| || ||| | ||||||| ||||||| || Sbjct 1219 AACACATTGGGAAATG-CATTTTCTCAAGTACTAATTGGAT-CAACGGATGAAGCAAAAG 1276 Query 1235 AGGGAATGCGACAAGGCTG-CT-TCAATTACCTA-GCTCGTGGAGATTTTAAAACAGCC- 1290 ||| |||| |||| || || || | | |||||| | | |||| | ||| || | | Sbjct 1277 AGGCAATGAGACAGGG-TGTCTATGA-TTACCTTTG-TAGTGGCGGGTTTCGTAC-GTCA 1332 Query 1291 GGAATGATGACTATTCTCGGAGGCATGAACCCTCACCCCCT-TACTCTAGTCCT-TCATC 1348 || |||||| || | ||||| |||||||| |||| || || | |||| ||| | ||||| Sbjct 1333 GGGATGATGGCTCTGCTCGGCGGCATGAATCCTCGTCCTCTCT-CTCTCGTC-TATCATC 1390 Query 1349 TT-GTAGCCATCACCCT-TACGTCCATGGGCCA-CTTGCTTTCTCCCTTTCCTTCGCCTG 1405 || || |||||||| || | | ||||| ||||| || ||| ||||| ||||| || || Sbjct 1391 TTTGT-GCCATCACTCTATCC-TCCATTGGCCAACT-GCTCTCTCCATTTCCCTCTCCCC 1447 Query 1406 TTCGCTTTTGGCATAGCCTCA-GACTTTTTGCCTGGGCTTTGCAAATGTTGG 1456 ||||| ||||||||||||||| | ||||||| | ||| || ||||||||| Sbjct 1448 TTCGCATTTGGCATAGCCTCAAG-CTTTTTGGTTTGGCCATGAAAATGTTGG 1498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74598009870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5