BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326708
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ... 291 4e-78
AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ... 219 2e-56
> AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B,
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family
protein | chr4:10687198-10689617 REVERSE LENGTH=1014
Length=1014
Score = 291 bits (157), Expect = 4e-78
Identities = 169/175 (97%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228
Query 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288
Query 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTG 175
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTG 343
Score = 224 bits (121), Expect = 4e-58
Identities = 127/130 (98%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 175 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGTTGCTGCTGCAATCATTGTC 234
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 376 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTT 435
Query 235 TTTGATGTTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 294
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 436 TTTGATGTTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 495
Query 295 GCACAAGGTA 304
||||||||||
Sbjct 496 GCACAAGGTA 505
> AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1,
ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244266-18246450
FORWARD LENGTH=1222
Length=1222
Score = 219 bits (118), Expect = 2e-56
Identities = 157/176 (89%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 1 ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGG 59
|||||| || |||||||||||| ||| |||||||||||||| ||||| |||||||||||
Sbjct 230 ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG 288
Query 60 AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA 119
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct 289 AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA 348
Query 120 ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTG 175
||||||||||||||| ||||||||||| ||||| || ||| | || ||||| ||||
Sbjct 349 ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTG 404
Score = 169 bits (91), Expect = 2e-41
Identities = 117/130 (90%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 175 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGTTGCTGCTGCAATCATTGTC 234
||||| ||||| ||||||||||||||||||||||| |||| |||||||| || ||||||
Sbjct 437 GAACGATACCACAGTTTGGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTC 496
Query 235 TTTGATGTTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 294
||||| |||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 497 TTTGACATTACTAATCAAGCCTCATTTGAGAGGGCGAAGAAATGGGTTCAGGAACTGCAG 556
Query 295 GCACAAGGTA 304
||||||||||
Sbjct 557 GCACAAGGTA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5