BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326713
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24270.1 | Symbols: SOS3, CBL4, ATSOS3 | Calcium-binding EF-... 1002 0.0
> AT5G24270.1 | Symbols: SOS3, CBL4, ATSOS3 | Calcium-binding EF-hand
family protein | chr5:8238534-8240366 REVERSE LENGTH=1006
Length=1006
Score = 1002 bits (542), Expect = 0.0
Identities = 615/651 (94%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 1 ATGGGCTGCTCTGTGTCGAAGAAGAAGAACAAGAATGCAATGCGACCGCCGGGATATGAG 60
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 91 ATGGGCTGCTCTGTATCGAAGAAGAAGAAGAAGAATGCAATGCGACCACCGGGATATGAG 150
Query 61 GATCCTGAGCTTCTTGCCTCCATTACGCCATTTACGGTAGCTGAAGTGGAGGCTTTGTAT 120
||||| ||||||||||| ||| | |||||||| ||||||| ||||||||||||||||||
Sbjct 151 GATCCCGAGCTTCTTGCATCCGTCACGCCATTCACGGTAGAAGAAGTGGAGGCTTTGTAT 210
Query 121 GAACTGTTCAAGAAGCTAAGCAGCTCAATTATTGACGACGGTCTTATTCATAAGGAAGAA 180
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 211 GAACTGTTCAAGAAGCTAAGCAGCTCAATTATCGATGATGGTCTTATTCATAAGGAAGAA 270
Query 181 TTCCAGCTGGCTTTATTGAGAAATAGGAACAGGAGGAATCTCTTCGCTGATCGGATATTT 240
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 271 TTTCAGCTGGCTTTATTCAGAAATAGGAACCGGAGGAATCTCTTCGCTGATCGGATATTT 330
Query 241 GATGTATTTGATGTGAAGAGAAATGGAGTGATCGAGTTTGGGGAATTTGTCCGGTCCTTA 300
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 331 GATGTATTTGATGTGAAGCGAAATGGAGTGATCGAGTTTGGTGAATTTGTCCGGTCCTTA 390
Query 301 GGCGTCTTCCATCCAAGCGCACCGGTCCATGATAAAA-TCAAATTTGCTTTCAAATTGTA 359
|| ||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||
Sbjct 391 GGTGTCTTCCATCCAAGCGCGCCGGTCCATGA-AAAAGTCAAATTTGCTTTCAAGTTGTA 449
Query 360 CGATTTACGACAAACTGGATTCATCGAGCGAGAAGAATTGAAAGAGATGGTAATTGCGCT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 450 CGATTTACGACAAACTGGATTCATCGAGCGAGAAGAATTGAAAGAGATGGTAGTAGCGCT 509
Query 420 TCTTCACGAATCAGAACTAGTTCTTTCCGAAGATATGATCGAAGTAATGGTGGATAAGGC 479
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 510 TCTTCACGAATCCGAACTAGTTCTTTCCGAAGATATGATTGAAGTAATGGTGGATAAGGC 569
Query 480 TTTTGTGGAAGCAGACCGCAAAAACGACGGAAAAATTGATATAGATGAATGGAAAGATTT 539
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 570 TTTCGTGCAAGCAGACCGCAAAAACGACGGAAAAATCGATATAGATGAATGGAAAGACTT 629
Query 540 TGTATCCTTGAATCCATCGCTCATCAAGAACATGACTTTGCCATATCTAAAGGACATAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TGTATCCTTGAATCCATCGCTCATCAAGAACATGACTTTGCCATATCTAAAGGACATAAA 689
Query 600 GGGGACGTTTCCAAGTTTTGTTTCATCTTGTGAAGACGAAGAATTGGAATT 650
|||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 690 TAGGACGTTTCCAAGTTTCGTTTCATCTTGTGAAGAGGAAGAAATGGAATT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5