BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326734
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24410.1 | Symbols: PGL4 | 6-phosphogluconolactonase 4 | chr... 1059 0.0
> AT5G24410.1 | Symbols: PGL4 | 6-phosphogluconolactonase 4 | chr5:8332473-8334066
REVERSE LENGTH=1085
Length=1085
Score = 1059 bits (573), Expect = 0.0
Identities = 716/787 (91%), Gaps = 2/787 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCAGTTTTGGCGAAAACGAAGAGGAAGAAGATTATATTTCCCACAAAGAATGAA 60
|||||||| ||||||| |||||||||||| ||||||||| | |||||||||||||| |||
Sbjct 83 ATGGCATCTGTTTTGGAGAAAACGAAGAGTAAGAAGATTGTGTTTCCCACAAAGAAAGAA 142
Query 61 TTGTCGGAGGCTATGGCCGA-GTACACGGCCAATCTCTCCGCCAAGTTCTGCAAGGTGAG 119
|| ||||||||||||||| | |||||||||||||||||| |||||||| ||||||| |||
Sbjct 143 TTATCGGAGGCTATGGCC-ACGTACACGGCCAATCTCTCAGCCAAGTTTTGCAAGGAGAG 201
Query 120 AGGTTACTTCACCGTAGTTCTTTCCGGTGGCGACCTCATCTCTTGGCTCAGTGAATTGGT 179
||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 202 AGGCTATTTCACCGTCGTTCTTTCCGGTGGCGACCTCATCTCCTGGCTCAGTGAATTGTT 261
Query 180 GGAACCAATGTATCAAGAAAGCATCGAATGGTCAAAGTGGCACGTCTTTTGGGTCGACGA 239
|||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||| ||
Sbjct 262 GGAACCAAAGTATCAAGAAAGTATCGAATGGTCAAAGTGGCACATTTTTTGGGTCGATGA 321
Query 240 GAGAGTTGTTCCATTGGACCATAAGGACAGCAATTACAAACTCGCTTTTGATGGTTTTCT 299
||| ||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 322 GAGGGTTGTTCCATTAGACCATGAGGACAGCAACTACAAACTCGCCTTTGATGGTTTTCT 381
Query 300 CTCCAAGGTTCCGATTCCAGTTGCGAACATACATGCAATCGACAAAGACTGTGCAGCCCT 359
|||||||||||| || ||| |||| |||||| || |||||||||||||||||||||||||
Sbjct 382 CTCCAAGGTTCCAATACCAATTGCAAACATATATCCAATCGACAAAGACTGTGCAGCCCT 441
Query 360 TGGTGATGCCAAAGGTGCCGCATTACTCTACGAAGAATGCCTCAAAAGACTGGTGAACCG 419
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 442 TGGTGATGCCAAAAGTGCAGCATTACTCTACGAAGAATGTCTCAAAAGACTGGTGAACCG 501
Query 420 AGACATCATCCGCACATACAAAGCCTCGGGCTTCCCTCAATTCGATCTCCAACTCCTAGG 479
| ||||||| |||||||||||| | || |||||||| || ||||| ||||| ||| ||||
Sbjct 502 AAACATCATTCGCACATACAAATCGTCTGGCTTCCCACAGTTCGACCTCCAGCTCTTAGG 561
Query 480 GATGGGTCCAGATGGTCATATGGCATCTTTGTTCCCGGGACATTATCAGATCAAGGAGAA 539
||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 562 AATGGGTCCAGACGGTCACATGGCGTCTTTGTTCCCGGGACATTATCAAATCAAGGAGAA 621
Query 540 GGCAGATTTGGTAACTTATATCACTGATTCCCCAAAACCGCCACCAAAGAGAATCACCTT 599
|||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 622 GGCAAATTTGGTAACCTATATCACTGATTCCCCAAAACCGCCTCCGAAGAGAATCACCTT 681
Query 600 CACATTACCGGTCATTAACTGTGCTTCCTATAACCTCATGGCCGTATGTGATGAGGCTCA 659
|| |||||||| |||||||| ||||| || ||||||||||| |||||||||||||||||
Sbjct 682 TACTTTACCGGTTATTAACTGCGCTTCATACAACCTCATGGCTGTATGTGATGAGGCTCA 741
Query 660 AGCTGATGCGGTAGCTAAGGTTTTCAGCGATAACTTCGACTTGCCTGCTGCTTGGCTCAC 719
||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 742 AGCCGATGCGGTAGCTAAGGTTTTCAACCATAACTTCGACTTGCCTGCTGCTTGGCTCAC 801
Query 720 AGCTGACAAAGAAGCCATCTGGTTTCTTGACCAAGCCGCTGCATCAAAGATCCCGAAAGG 779
||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 802 AGCTGACGTAGAAGCTATCTGGTTTCTTGACCAAGCCGCTGCATCTAAGATCCCAAAAGG 861
Query 780 ACATTGA 786
|| ||||
Sbjct 862 ACTTTGA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5