BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326737
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5... 1327 0.0
> AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:8345402-8347776
REVERSE LENGTH=963
Length=963
Score = 1327 bits (718), Expect = 0.0
Identities = 887/965 (92%), Gaps = 25/965 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGTCGCAGAAAATGTTGGTGTGAAGGTGGATTCTTCTGATGATCAAAATTTAGAC 60
||||||||||| ||||||||||||||||||||||| |||||| || |||| ||| |||||
Sbjct 1 ATGGCTGTCGCGGAAAATGTTGGTGTGAAGGTGGACTCTTCTAATAATCAGAATATAGAC 60
Query 61 AACAATACTACTTCATTAGCAGAGACAAAACCGTCATGTCCTGATGACCAGACACCTAAA 120
||||| ||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||
Sbjct 61 AACAACACTACTTCATTAGTAGAGACAAAACCATCATGTTCTGATGATCAGACACCTAAA 120
Query 121 TCCAATTCCTCTGTTCTCACAAACGAATTGATCCAAAGAACCAGTGAAGTGGATCTCATG 180
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
Sbjct 121 TCCAAATCCTCTGTTCTAACAAACGAATTGATCCAAAGAACCAGTGAAGTGAATCTCAAG 180
Query 181 AGTGAGATAAGTCGTTTGAATCCGATGGCTAAGGAATTTGTCCCTTCTTTTCTTGCTCAA 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGTGAGATAAGTCATTTGAATCCGATGGCTAAGGAATTTGTCCCTTCTTTTCTGGCTCAA 240
Query 241 A--C-CCACTCTGAGTTTTTGAGAAGTAGATTATGGTTCACTAACAATTTTCC--AG--- 292
| | |||||||||||||| | ||| |||||| ||||| |||||| ||||||| ||
Sbjct 241 ACCCACCACTCTGAGTTTTGGGGAAATAGATTCTGGTTTACTAACCATTTTCCAAAGCAA 300
Query 293 -------TGC--A--AGCTA-TTT-CTACAATGAGAAGGAGCTTTGGCCAAGGGAGGCGA 339
| | | || | ||| ||||||||||||||| ||||||| ||||||||| |
Sbjct 301 ACTATTTTTCTTATTGGCCAGTTTGCTACAATGAGAAGGAACTTTGGCAAAGGGAGGCCA 360
Query 340 TGGATTAA-CaaaaaaaCAAACTTGGTTCAGAATGAAGATGTAATCAAGAGAACTGTATA 398
|||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 361 TGGA-TAACCAAAAAAACAAACTTGGTTCAGAATGAAGATATGATCAAGAGAACTGTATA 419
Query 399 TGTCTCAGACATCGATCAA-CAAGTTACTGAGGAGCAACTTGCAAGTCTCTTTCTTTCTT 457
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TGTCTCAGACATCGAT-AACCAAGTTACTGAGGAGCAGCTTGCAAGTCTCTTTCTTTCTT 478
Query 458 GTGGCCAGGTTGTTGATTGCCGTATATGCGGTGACCATAAGTCCATTCTTCGTTTCGCCT 517
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 479 GTGGCCAGGTTGTTGATTGCCGTATGTGCGGTGACTATAAGTCCATTCTTCGTTTCGCCT 538
Query 518 TCATTGAGTTCACCGATGCAGAGGGAGCTAGGTCTGCCTTACGAAAATCGGGTACTGTGT 577
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 539 TCATTGAGTTCACCGATGCAGAGGGAGCTAGGTCTGCTTTACGAAAATCCGGTACTATGT 598
Query 578 TTGGTTCTCATCCTATTAGGGTTCATATTTCCAAAACAGCTATTGCACCTGTTAACCCGT 637
||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 599 TTGGTTCTCATCCTATTAGGGTTTTTATGTCCAAAACAGCTATTGCGCCTGTTAACCCGT 658
Query 638 CGTTCCTTCCACGGTCCGAGGAAGAGCTAGAGAAGTGTGGAAAGACAGTTTATTGTACCA 697
| |||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 659 CTTTCCTTCCACAATCCAAGGACGAGCTAGAGAAGTGTGGAAAGACTGTTTATTGTACCA 718
Query 698 ACATTGACAAGCAGGTCACTAAGATGGAGTTGGAAAATTTCTTTAAAACTGTTTGTGGGG 757
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 ACATTGACAAGGAGGTCACTAAGATGGAGTTGGAAAATTTCTTTAAAACAGTTTGTGGGG 778
Query 758 AGGTTCACCATCTGAGGTTGCTTGGAGACTTTTACCACCAAACCCGCATTGCTTTTGTCG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGTTCACCATCTGAGGTTGCTTGGAGACTTTTACCACCAAACCCGCATTGCTTTTGTCG 838
Query 818 AATTTAAGCTGGCAGAAAGTGCAATTTCTGCTCTTAATTACAGTGGTGTTGTCTTGGGAG 877
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 AATTTAAGCTGGCAGAAAGTGCAATTTCTGCTCTTAATTGCAGTGGTGTTGTCTTGGGAG 898
Query 878 AGCTCCCAATAAGGATAAGCCCATCAAAGACGCCAGTGAGGCCACACCACTCTGATTTAA 937
|||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 899 AGCTCCCAATAAGGGTAAGCCCGTCAAAGACGCCAGTGAGGCTACACCACTCTGATTTAA 958
Query 938 ACTAA 942
|||||
Sbjct 959 ACTAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5