BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326738
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24450.1 | Symbols: | Transcription factor IIIC, subunit 5 ... 2446 0.0
AT3G49410.1 | Symbols: | Transcription factor IIIC, subunit 5 ... 1197 0.0
> AT5G24450.1 | Symbols: | Transcription factor IIIC, subunit
5 | chr5:8348242-8353303 FORWARD LENGTH=2003
Length=2003
Score = 2446 bits (1324), Expect = 0.0
Identities = 1545/1647 (94%), Gaps = 34/1647 (2%)
Strand=Plus/Plus
Query 1 ATGGGAATCATTGAAAACGGAACAATATCGGGTAACTTGCCGAGCAAGGAGGCGTTTGTG 60
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 166 ATGGGAATCATTGAAAACGGAACTATCTCGGGTAACTTGCCTAGCAAGGAGGCGTTTGTG 225
Query 61 GTTCACTATCCTGGCTACCCATCATCTATTTCCCGAGCTTTGGAGACTCTTGGGGGAATC 120
||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 226 GTTCACTATCCTGGCTATCCATCATCTATTTCCCGAGCCGTGGAGACTCTCGGGGGAATC 285
Query 121 CAAGGGATCACAACCGCAAGAGAATTAATGTCAAACAAGCTTGAGCTTCATTTCCGCCCT 180
||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 286 CAAGGAATCACAACCGCAAGAGAATCAACGTCAAACAAGCTTGAGCTGCATTTCCGCCCT 345
Query 181 GAAGACCCTTATGCACATCCTGTCT-TGGGAGAACAACGTCCTTGTCATGGTTTTCTGTT 239
|||||||||| ||||||||||| || | ||||||| ||||| |||| |||||||||||||
Sbjct 346 GAAGACCCTTCTGCACATCCTGCCTAT-GGAGAACGACGTCATTGTAATGGTTTTCTGTT 404
Query 240 AAAAATTTCGAAGGAGG-TCGTTAAGAAAGATTCTCTGCCTGAAAGTCAACCTGTTCTTG 298
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 405 AAAAATTTCGAAGGAGGAT-GTTAAGAAAGATTCTCTGCCTGAAAGTCAACCTGTTATTT 463
Query 299 CCACTAGCAATGCATGCTTACCAGAAGAT-TTCCCAGCCCTGTGTGCTGATATTGTAGCT 357
|||||||| |||||||||||||||||| | |||||| || ||||||||||||||||||
Sbjct 464 CCACTAGCGATGCATGCTTACCAGAAG-TGCGCCCAGCTCTATGTGCTGATATTGTAGCT 522
Query 358 CGTGTGTCTGAATCGTATTGTTTTGATGGCATGGCCGACTACCAGCATGTAGTTCCTATT 417
|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 523 CGTGTGTCTGAATCGTATTGCTTTGATGGCATGGTCGACTACCAGCATGTAATTCCTATT 582
Query 418 CACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAAGTCACTTGCAGGA 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 583 CACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAAGTCGCTTGCAGGA 642
Query 478 AAAAACGATCTAATGAACATGGCTGATGAAGATGTAATGATGTTATTGCCACAGTTCTTT 537
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AAAAATGATCTAATGGACATGGCTGATGAAGATGTAATGATGTTATTGCCACAGTTCTTT 702
Query 538 TCACCCAAAGATATGCCAGACAACTTGGTGCTGAGACTTCCAGTAACATCAAGCCCAAAA 597
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 703 TCACCCAAAGATAGGCCAGACAACCTGGTGCTGAGACTTCCAGTAACATCAAGCCCAAAA 762
Query 598 AAGAAAGATGAGGAACTAACTCAGAATCTTTATGAGATAGATATTGGCCCAGTATTTGCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AAGAAAGATGAGGAACTAACTCAGAATCTTTATGAGATAGATATTGGCCCAGTATTTGCA 822
Query 658 ATTGA---T--T-TC--AG-TATCCCGAAGATATTAAAATGGGAAGACTTTATTGTTCCC 708
||||| | | || || ||||| |||||||||||||||||||||| ||| ||||||
Sbjct 823 ATTGATTTTAGTGTCAAAGAGATCCCAAAGATATTAAAATGGGAAGACTATATCGTTCCC 882
Query 709 AGCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTG 768
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ACCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTG 942
Query 769 TGGACAAGAGATTCCATAGTCCAACGACTACTTGATAAAGGTCTTAAATGCACACATCAT 828
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 943 TGGACAAGAGATTCCATAGTCCAACGACTACTCGATAAAGGTCTTACATGCACACATCAT 1002
Query 829 ATGCTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTTTCGGGTGGTCCATTTCTTAGG 888
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1003 ATGTTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTCTCGGGTGGTCCATTTCTTAGG 1062
Query 889 TTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGAATCTCGCGTATTCCAGAGA 948
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1063 TTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGAATCTCGTGTATTCCAGAGA 1122
Query 949 ATGGAATTCAGGGTTCCACCTGAATTAAAGGGTTATTGTGATTCCAATGCAACTAACAAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ATGGAATTCAGGGTTCCACCTGAATTAAAGGGTTATTGTGATTCCAATGCAACTAACAAG 1182
Query 1009 TCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGTATTTCCTTTCAAGTGCCAAACA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1183 TCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGTATTTCCTTTCAAATGCCAAACA 1242
Query 1069 TTTCTACAGTTATTCGAACTTGACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCC 1128
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTTCTACAGTTATTTGAACTTGACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCC 1302
Query 1129 AAGCAGACTACTTGTAATTATAAAACAGGATGGTTTTCTGAAGCGCTGCTTGACAATTTG 1188
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1303 AAGCAGACTACTTGTAATTATAAAACAGGATGGTTCTCTGAAGCGCTGCTTGACAATTTG 1362
Query 1189 AGACTTCGTGTAGCTGTGAGGTATGTATCTGTGTTTCCGGAGCCAGGTTTTGAAGACGTT 1248
||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 1363 AGACTCCGTGTAGCTGTGAGGTTTGTATCTGTGTTTCCTGAGCCAGGTTTCGAAGACGTT 1422
Query 1249 TTTAAATCTATTCAAGAAGAGTTTGAGAGGTCAGAAAAGACACGAATTCAGAAAGATGCA 1308
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1423 TTTAAATCTATTCAAGAAGAGTTTGAGAGGTCTGAAAAGACACGTATTCAGAAAGATGCA 1482
Query 1309 CTGAAACCATA-TCAACGGAATCACCAGGAAACATCTAAAGATATGAAGAAGTGTAAAAA 1367
||| ||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1483 CTGCAACCA-AGTCAACGGAATCACCAGGAAACAACTAAAGATATGAAAAAGTGTAAAAA 1541
Query 1368 CACAAACAAAGAGAAAGAT-AGTGATGTTAATGCGGATGACGATACTGAAGACGTAGATG 1426
||||||||| ||||||||| | |||||||||||||||||| ||| |||||||| | ||||
Sbjct 1542 CACAAACAAGGAGAAAGATGA-TGATGTTAATGCGGATGAGGATTCTGAAGACTTGGATG 1600
Query 1427 ATGAAGACGAGGAACTCAATGTGGCTGCAAATGATGATGAGATATCGATTAGTTCTCACG 1486
||||| ||||||| | | |||||||||||||||| ||||| || |||||||| |
Sbjct 1601 ATGAATACGAGGA-------G-G-CTGCAAATGATGATGACATATCAATAAGTTCTCATG 1651
Query 1487 AATATGGTGACATGGAGAACAACTCCAGAACCTATCTACAAGGTTTGTTCAATAGTTTTC 1546
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1652 GATATGGTGACATGGAGAACAACTCCAGAACCTATCTGCAAGGTTTGTTCAATAGGTTTC 1711
Query 1547 CAAGCAGCGCACCAGCTTTGTATGGTAATGCCAATGATG-----G-TAGCGATGGAGAGT 1600
||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1712 CAAGCAGCGCATCAGCTTTGTATGGTAGTGCCAATGATGATAATGATAGCGATGGAGAGT 1771
Query 1601 ATCCGATTTACGAGCAAGAATCCAACG 1627
|||||||||||||||||||||||||||
Sbjct 1772 ATCCGATTTACGAGCAAGAATCCAACG 1798
> AT3G49410.1 | Symbols: | Transcription factor IIIC, subunit
5 | chr3:18324746-18329191 FORWARD LENGTH=1990
Length=1990
Score = 1197 bits (648), Expect = 0.0
Identities = 1160/1397 (83%), Gaps = 76/1397 (5%)
Strand=Plus/Plus
Query 1 ATGGGAATCATTGAA-AACGGAACAATATCGGGTAACTTGCCGAGCAAGGAGGCGTTTGT 59
|||||||| || ||| || |||||||| || |||| |||||| |||||||||||||||||
Sbjct 84 ATGGGAATTATAGAAGAA-GGAACAATCTCAGGTACCTTGCCAAGCAAGGAGGCGTTTGT 142
Query 60 GGTTCACTAT-CCTGGCTACCCATCATCTATTTCCCGAGCT-TTGGAGACTCTTGGGGGA 117
|| |||| | ||||| |||||||| |||||||| |||||| || || || ||||| ||
Sbjct 143 AGTACACT-TCCCTGGTTACCCATCTTCTATTTCTCGAGCTATT-GAAACACTTGGAGGT 200
Query 118 ATCCAAGGGA-T-CACAACCGCAAGAGAATTAATGTCAAACAAGCTTGAGCTTC-ATTTC 174
|||||||| | | ||||| ||||| |||| ||| ||||| ||||||||||| | |||
Sbjct 201 ATCCAAGGAATTACACAA--GCAAGGGAATCAATTTCAAATAAGCTTGAGCTACGGTTT- 257
Query 175 CGCCCTGAAGACCCTTATGCACATCCTGTC-TTGGGAGAACAACGTCCTTGTCA-TGGTT 232
|| |||||||| |||||||||||||||| | ||||||||||||||||||||| | |||||
Sbjct 258 CGGCCTGAAGATCCTTATGCACATCCTG-CATTGGGAGAACAACGTCCTTGT-AGTGGTT 315
Query 233 TTCTGTTAAAAATTTCGAAGGAGG-TCGTTAAGAAAGATTCTCTGCCTGAAAGTCAACCT 291
|| |||||| |||||| ||| ||| | | ||| || | ||||||||||| ||
Sbjct 316 TTTTGTTAAGAATTTCTAAGCAGGAT-ATCAAG-AA-A-------CCTGAAAGTCAGTCT 365
Query 292 GTTCTTGCCACTAGCA---ATGCATGCTTACCA-GAAGAT-TTCCCAGCCCTGTGTGCTG 346
||||||| |||||| | ||| ||| ||| | |||| | | |||| || ||||| |
Sbjct 366 GTTCTTGACACTAGTAGGGATGTATGTTTA-GAGGAAGCTAGT-CCAGTTCTATGTGCAG 423
Query 347 ATATTGTAGCTCGTGTGTCTGAATCGTATT-GTTTTGATGGCATGGCCGACTACCAGCAT 405
|||| ||||||||| |||||||||||| || |||||||||||||| ||||| ||||||
Sbjct 424 ATATCGTAGCTCGTTTGTCTGAATCGT-TTCACTTTGATGGCATGGCTGACTATCAGCAT 482
Query 406 G-TAGTTCCTATTCACGCTGATATTGCACAGCAGAAGAAGAGAAAATGGATGGAGGTGAA 464
| || ||||||||||||| || ||||| |||||||| |||||||| |||||||| ||| |
Sbjct 483 GTTA-TTCCTATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAGTGGATGGATGTGGA 541
Query 465 GT-CACTTGCAGGAAAAAACGATCTAATGAACATGGCTGATGAAGATGTAATGATGTTAT 523
| | ||| ||||||||| ||| | ||| | |||||||||||||||||||||||||||
Sbjct 542 -TCCCCTTACAGGAAAAAGTGATTTGATGGGCCTGGCTGATGAAGATGTAATGATGTTAT 600
Query 524 TGCCACAGTTCTTTTCACCCAAAGATATGCCAGACAACT-TGGTGCTGAGACTTCCAGTA 582
|||||||||||||| ||||||||||||| || ||||| | ||| | ||| || ||| |
Sbjct 601 TGCCACAGTTCTTTGCACCCAAAGATATACCGGACAA-TGTGGCGTTGAAACCTCCGGCG 659
Query 583 ACATCAAG-CCCAAAAAAGAAAGATGA-GGAACTAACTCAGAATC-TTTATGAGATAGAT 639
||||| | ||| || ||||||||||| | | | |||||||| | |||||||||| |||
Sbjct 660 ACATCTGGTCCC-AAGAAGAAAGATGATGCAGC-GACTCAGAA-CTTTTATGAGATTGAT 716
Query 640 ATTGGCCCAGTATTTGCAATTGATTTCA--GT-------ATCCCGAAGATATTAAAATGG 690
|||||||||| |||||||||||||||| || ||||| |||| | | || |||
Sbjct 717 GTTGGCCCAGTGTTTGCAATTGATTTCAGCGTCAAAGAGATCCCAAAGAAACTGAAGTGG 776
Query 691 GAAGACTTTATTGT-TCCCAGCTCCAACCAATGGAAATGGCAGGTAGCAGTGTCTGCATT 749
||||||||| || | || |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 777 GAAGACTTTGTT-TCTCGCAGCTCCAACCACTGGCAATGGCAGGTAGCAGTGTCTGCATT 835
Query 750 GTTTGAAGAGCGACCTGTGTGGACAAGAGATTCCATAGTCCAACGACTACTTGATAAAGG 809
|||||| ||||| ||| | |||||||| ||||| | || ||||||||||||||||||||
Sbjct 836 GTTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTTGTTCAACGACTACTTGATAAAGG 895
Query 810 TCTTAAATGCACACATCATATGCTAAACAGGTTTCTTCTTAGGGCTGCATATTATTTTTC 869
||||||||| |||||||||||| ||||||||||||| || || |||||||||||||| ||
Sbjct 896 TCTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGAGCTGCATATTATTTCTC 955
Query 870 GGGTGGTCCATTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAAAGATCCTGA 929
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 956 CAGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAATGATCCTGA 1015
Query 930 ATCTCGCGTAT-TCCAGAGAATGGAATTCAGGGTTCCACCTGAATTAA-AGGGTTATTGT 987
||||| |||| || |||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 1016 GTCTCGTGTATATC-AGAGAATGGAATTCAGGGTTCCTCCTGAATTACGAGG-TTATTGT 1073
Query 988 GATTCCAATGCAACTAACAAGTCAAAGCCAAGCTGGGATGACATTTGTGCGTTTAAAGT- 1046
||| |||||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||
Sbjct 1074 GATGCCAATGCAACTAACAACTCAAAGCCAAGCTGGAACGACATTTGTGCTTTTAA-GTT 1132
Query 1047 ATTTCCTTTCAAGTGCCAAACATTTCTACAGTTATTCGAACTTGACGATGAGTACATTCA 1106
||||||||| || |||||||| ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 1133 ATTTCCTTTTAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTGACGACGAGTACATCCA 1192
Query 1107 ACAAGAGATAAGAAAGCCTCCCAAGCAGACTACTTGTAATTATAAAACAGGATGGTTTTC 1166
| |||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||
Sbjct 1193 GCGAGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGTCATAAATCAGGATGGTTTTC 1252
Query 1167 TGAAGCGC-TGCTTGACAATTTGAGACTTCGTGTAGCTGTGAGGTATGTATCTGTGTTTC 1225
||||| | ||||||| | ||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 1253 AGAAGC-CATGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGTTTGTGTCTGTGTTTC 1311
Query 1226 CGGAGCCAGGTTTTGAAGACGTTTTTAAATCTATTCAAGAAGAGTTTGAGAGGTCAGAAA 1285
| ||| ||||||| ||||| || |||||||| || |||||||| |||||||| |||||||
Sbjct 1312 CTGAGACAGGTTTCGAAGATGTATTTAAATCCATCCAAGAAGAATTTGAGAGATCAGAAA 1371
Query 1286 A-G-ACACGAATTCAGAAAGATG-CACTGAAACCATATCAACG-GAATCACCAGGAAACA 1341
| | ||| |||||||||||| | |||| ||||||| | | | ||| |||| ||| ||
Sbjct 1372 AAGTACA--AATTCAGAAAGA-GACACTTAAACCATCTTTA-GTGAAGCACCGGGAGGCA 1427
Query 1342 TCTAAAGA-TATGAAGA 1357
|||||| | ||||||
Sbjct 1428 ACTAAAGGCTCTGAAGA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5