BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326742
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24500.1 | Symbols: | unknown protein; Has 133 Blast hits t... 1299 0.0
> AT5G24500.1 | Symbols: | unknown protein; Has 133 Blast hits
to 129 proteins in 40 species: Archae - 2; Bacteria - 0; Metazoa
- 60; Fungi - 5; Plants - 29; Viruses - 0; Other Eukaryotes
- 37 (source: NCBI BLink). | chr5:8367302-8368736 REVERSE
LENGTH=1192
Length=1192
Score = 1299 bits (703), Expect = 0.0
Identities = 850/918 (93%), Gaps = 21/918 (2%)
Strand=Plus/Plus
Query 1 ATGCTCAGCTCCATCATCGACGACAAGCCCGTCGCTTCCACTTGGCTCAACCGCCTCCGT 60
||||| |||||||||||||||||||| || | | | |||||||||||||||||||||||
Sbjct 22 ATGCTAAGCTCCATCATCGACGACAAACCTGCCTCCTCCACTTGGCTCAACCGCCTCCGA 81
Query 61 TTAAACAGAGGACTCTCCACCACCGACGACGACGATGCTTCTGGCAATCCACTTACTCTC 120
||||||||||| | || ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 82 TTAAACAGAGG-C-CT-CACAACCGACGATGACGATGCTTCTGGCAATCCACTTACTCTC 138
Query 121 GACGACTTTCTCCGCCGCAACCACCACACCGAAATCACCGCCACTAGTTCCGCCTCCGAT 180
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 139 GACGACTTTCTCCGCCGCAACCACCACACGGAAATCGCCGCCACTAGTTCCGCTTCCGAT 198
Query 181 TCACCTCCATCTGCTCCAATTCCTTCAGATCCAGAATTAGCTGAAAGTCCATCGGAAGAA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 199 TCACCTCCATCTGCTCCAATTCCTTCAGATCCAGAATTAGCTGAAAGTCCATCGGAGGAG 258
Query 241 CCAGTTCCCGGAGAATGGTACGGCGTGATGAGCGATGTTCTCTCCGAACTATTCAATTTC 300
|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 259 CCAGTTCCTGGAGAATGGTACGGCGTGATGAGCGATGTTCTCTTCGAGCTATTCAATTTC 318
Query 301 AGCGGCTCATCTAAATCTTCCACAATTCCCGGGAAGAAGAAGTTGCCAAGGAAACAATCA 360
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 319 AGCGGCTCCTCTAAATCTTCCACAATTCCCGGGAAGAAGAAGTTACCAAGGAAACAATCA 378
Query 361 AACCCTAGGCATTGCTCTTTAGACACTCCT-AACGACGTTGTT---CCATTGGTAAATCA 416
||||||||||||||||||||||| |||||| || ||||||||| || |||||||||||
Sbjct 379 AACCCTAGGCATTGCTCTTTAGAGACTCCTGAA-GACGTTGTTGTTCCGTTGGTAAATCA 437
Query 417 GAAGAGCAACGACGCGAATTGTGTTCCAAGTGTTCGTGAATTCGCTACTTCATCATCGCG 476
||| ||| ||||||| |||||| | || |||||||||||||||||||||||||| |||||
Sbjct 438 GAAAAGCGACGACGCTAATTGTCTCCCTAGTGTTCGTGAATTCGCTACTTCATCGTCGCG 497
Query 477 TAGTTCGTACAATAAGAAACCTCCGGCGCCGGAGATTAGGg-gaaggagaagaagtatag 535
|||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 498 TAGTTCATACAATAAGAAACCTCCGGCGCCGGAGATTAGGGAGA-GGAGAAGAAGTGTAG 556
Query 536 cggaaggtga-ggatgtggatgaggaggaagagaaaggagagaaggaTTTAGTTGGATTT 594
||||||||| || |||||||||||| ||||||||||||||||| ||| ||||||| |||
Sbjct 557 TGGAAGGTGATGG-TGTGGATGAGGAAGAAGAGAAAGGAGAGAAAGATCTAGTTGGGTTT 615
Query 595 TCGAGGAGTGAAGTGACGGTGATTGATACGAGCTTCAAGATTTGGAAATCTGAGAAACTT 654
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 616 TCGAGAAGTGAAGTGACCGTGATTGATACTAGCTTTAAGATTTGGAAATCTGAGAAACTT 675
Query 655 GTTTTCAGGAGGAGAAATGTTTGGAAAGTGAGGGagaagaaaggtaaatcaagagttgtt 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 676 GTTTTCAGGAGGAGAAATGTTTGGAAAGTGAGAGAGAAGAAAGGTAAATCAAGAGTTGTT 735
Query 715 tcgaagacgaagaagatgatgaagaagaagaagaagaagaaaaagaGGAAATGTGACG-T 773
|||||| ||||||| |||||||||||||||||||||| ||| |||||||||||| | |
Sbjct 736 TCGAAGTTGAAGAAGTTGATGAAGAAGAAGAAGAAGAA-AAA--GAGGAAATGTGATGAT 792
Query 774 C--GATGATGATGATGGTGAAATTGCTCGGAAAA---GCAAGAAGATGAAGATTTCAACA 828
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 793 GTTGATGATGATGATGGTGGAATTGCTCGGAAAAAAAGCAAGAAGATGAAGATTTCAACA 852
Query 829 TCAGTTTCAGACAATAATCCACGCTATGACGTCGAAGAGATTCATGATGAACCAGAAAGC 888
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 853 TCAGTTTCAGACAATAATCCACGCTATAACGTCGAAGAGATTCATGATGAACCAGAAAGC 912
Query 889 AGCAATGTCAGCCGAAGG 906
||||||||||||||||||
Sbjct 913 AGCAATGTCAGCCGAAGG 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5