BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326746

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24560.1 | Symbols: AtPP2-B12, PP2-B12 | phloem protein 2-B1...   470    1e-131


> AT5G24560.1 | Symbols: AtPP2-B12, PP2-B12 | phloem protein 2-B12 
| chr5:8402205-8403266 FORWARD LENGTH=756
Length=756

 Score =  470 bits (254),  Expect = 1e-131
 Identities = 407/475 (86%), Gaps = 33/475 (7%)
 Strand=Plus/Plus

Query  1    ATGAATTTTCTTGATTTACCGGAAGAATGCATCTCC-GCAGTGATTTCTTTCACCAG-TC  58
            |||||||||||||||||||| || ||||||||| ||  || ||||||||||||||||  |
Sbjct  1    ATGAATTTTCTTGATTTACCAGAGGAATGCATCGCCACCA-TGATTTCTTTCACCAGCCC  59

Query  59   CTACGACGCCTGCCGTATCTCTGCTGTCTCCAAATTGCTCCGCGT-CGCCGTGGATTCTA  117
            || |||||| |||||||||||||||||||| |||||||| ||| | ||| | |||||| |
Sbjct  60   CTTCGACGCATGCCGTATCTCTGCTGTCTCTAAATTGCTTCGC-TCCGCGGCGGATTCCA  118

Query  118  ATACCGTTTGGGAGAGATTTCTTTCC-TCAGATTCTCTTACGTATATCGATAAATCTTTA  176
            |||||  |||||||||||||| |||| ||||||| || || |||||||||||| ||||||
Sbjct  119  ATACCACTTGGGAGAGATTTC-TTCCATCAGATTATCGTATGTATATCGATAATTCTTTA  177

Query  177  TCTAGATTTTCCAATAACCAGTTGTTCCT-CTGTTTCTGCGAATCTCCTCTTCTCATCGA  235
            |||||||||||||| || ||| | ||||| | |||| || ||||| ||||||||||||||
Sbjct  178  TCTAGATTTTCCAACAAGCAGCTCTTCCTAC-GTTTTTGTGAATCCCCTCTTCTCATCGA  236

Query  236  CAATGGAAGAAC--GCTTTTGGATGGACAAGAGAAGCGCGAAGAAATGTTGGATGTTATC  293
              ||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  237  GGATGGAAGAACGAGCTTTTGGATGGAAAAGAGAAGCGGGAAGAAATGTTGGATGTTATC  296

Query  294  TGCAAGGAAACTAGATATCATTTGGGTTGATAGTCTTGAATTCTGGATATGGATTTCGAT  353
            ||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||
Sbjct  297  TGCAAGGAAACTAGATATTGTTTGGGTTGATAGTCCTGAATTCTGGATATGGGTTTCGAT  356

Query  354  TCCGGACTCGAGATCAATTAATTTCATCTCAATTGTTCGAGGAAGTTGCAGGGCTTCTAA  413
            ||||||||||||||   ||               |    |||||||||||||||||||||
Sbjct  357  TCCGGACTCGAGAT---TT---------------G----AGGAAGTTGCAGGGCTTCTAA  394

Query  414  TGGTATGTTGGTTCGAAATCCGAGGAAAAATAAGCACATCCCTTCTCTCCAAAGC  468
            ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  395  TGGTATGTTGGTTTGAAATCCGAGGTAAAATAAGCACATCCCTTCTCTCCAAAGC  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36118351693


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5