BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326748
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24590.2 | Symbols: ANAC091, TIP | TCV-interacting protein |... 1157 0.0
> AT5G24590.2 | Symbols: ANAC091, TIP | TCV-interacting protein
| chr5:8416662-8418933 REVERSE LENGTH=1824
Length=1824
Score = 1157 bits (626), Expect = 0.0
Identities = 864/972 (89%), Gaps = 43/972 (4%)
Strand=Plus/Plus
Query 1 ATGAAAGAAGACATGGAAGTATTATCGCTCGCTTCACTACCGGTAGGGTTCAGATTCAGT 60
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 211 ATGAAAGAAGACATGGAAGTACTATCGCTCGCTTCACTACCGGTTGGGTTCAGATTTAGT 270
Query 61 CCAACAGACGAAGAGTTAGTCCGTTACTATCTCCGACTCAAGATCAACGGTCACGATGAC 120
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 271 CCAACGGACGAAGAGTTAGTCCGGTACTATCTCCGGCTCAAGATCAACGGTCACGATAAC 330
Query 121 GACGTTAGAGTAATCCGTGAGATCGATATCTGCAAATGGGAGCCTTGGGATTTACCTGAT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 331 GACGTTAGAGTAATTCGTGAGATCGATATCTGCAAATGGGAGCCTTGGGATTTGCCTGAT 390
Query 181 TTTTCTGTGGTGAAGACAATAGACGCAGAGTGGCTCTTCTTTTGTCCATTAGACCGCAAG 240
||||||||||||||||||| |||| |||||||||||||||||||||| || ||||| ||
Sbjct 391 TTTTCTGTGGTGAAGACAACAGACTCAGAGTGGCTCTTCTTTTGTCCTTTGGACCGGAAA 450
Query 241 TATCCGAGTGGAAGTAGGATGAATCGAGCTACTGTGGCTGGTTACTGGAAGGCGACGGGA 300
||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 451 TATCCGAGTGGAAGTCGAATGAATAGAGCTACTGTGGCTGGATACTGGAAGGCGACGGGA 510
Query 301 AAAGATCGTAAGATCAAATCAGGAAAGACTAAGATTATAGGTGTTAAGAGGACTCTAGTC 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AAAGACCGTAAGATCAAATCAGGAAAGACTAAGATTATAGGTGTTAAGAGGACTCTAGTG 570
Query 361 TTCTATACAGGTCGTGCTCCTAAAGGGACACGAACTTGTTGGATTATGCATGAGTACCGC 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 571 TTTTATACAGGTCGTGCTCCTAAAGGGACACGAACTTGTTGGATTATGCATGAGTATCGT 630
Query 421 ACTACTGAGAAGGATCTTGATGGAACAAAGTCTGGCCAGAATCCTTTTGTTGTTTGTAAG 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 631 GCTACTGAGAAGGATCTTGATGGAACAAAGTCTGGCCAGAATCCGTTTGTTGTTTGTAAG 690
Query 481 TTGTTTAAGAAGCAAGACATTGTGAATGGAGCTGCGG--C-AGAGGAGTTGAAGTCATGT 537
||||||||||||||||| |||||||| |||||||| | | ||| |||| |||||||||
Sbjct 691 TTGTTTAAGAAGCAAGATATTGTGAACGGAGCTGCTGAACCAGAAGAGTCAAAGTCATGT 750
Query 538 GAAGTTGAACCAGCGGTCTCGTCTCCAACTGTTGTGGATGAGATGAAATCTGAGGTTGAA 597
||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 751 GAAGTTGAACCAGCGGTATCGTCTCCAACTGTTGTGGA-----------C-GAGGTTGAA 798
Query 598 ATGTCTGAGGTATCTCCGGTTTTAG--AAGACACAAG-G-C----C-TTGTGACGTCGCT 648
||||||||||||||||| ||||| || ||| ||| | | | ||||||||||||
Sbjct 799 ATGTCTGAGGTATCTCCTGTTTTCCCTAAAACAGAAGAGACTAATCCTTGTGACGTCGCA 858
Query 649 GAATCTTCTCTTGTAGTCTCCAGCGGATGTCGTAGCGAAAACTCTGCCCCTGAGGTTACA 708
|| |||||||||||| || |||||| ||||||||| | | |||||| |||||||||||||
Sbjct 859 GAGTCTTCTCTTGTAATCCCCAGCGAATGTCGTAGTGGATACTCTGTCCCTGAGGTTACA 918
Query 709 ACCACCGGGCTTGACGATATCGATTGGCTCTCATTTATGGAGTTTGATTCCGTGAATCAG 768
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 919 ACCACCGGGCTTGACGATATCGATTGGCTCTCGTTTATGGAGTTTGATTCCCCGAA---G 975
Query 769 AATCTGTTCTCTCCGTTGC-CTTCTCAGGTGCAATCTGAGCTTTGTTCCTCTTTCAATGG 827
|||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 976 ---CTGTTCTCTCCGTTGCACT-CTCAGGTGCAATCTGAGCTCGGTTCCTCTTTCAATGG 1031
Query 828 TTTTCAATCTG-GAACAAGCCAACTGTTCAA---------TGAGGATCACATTCAGACTC 877
|| ||||||| | | || || ||||||| ||||||| ||||||||||||
Sbjct 1032 CTTACAATCTGAGT-CTAGTGAATTGTTCAAAAACCACAATGAGGATTACATTCAGACTC 1090
Query 878 AGTATGGTACAAATGATGCCGATGAATATATGTCCAAGTTCTTGGATTCTCTTCTTGAGA 937
|||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 1091 AGTACGGTACAAATGATGCGGATGAATATATGTCCAAGTTCTTGGATTCTTTTCTTGACA 1150
Query 938 TACCCTATGAGC 949
| ||||||||||
Sbjct 1151 TTCCCTATGAGC 1162
Score = 579 bits (313), Expect = 3e-164
Identities = 378/409 (92%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 981 GCCAGAACACATCACATACGAGCCACAGAATCTTAGCACATGCAACAAGATCAATGATGT 1040
||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1161 GCCAGAACAGATCCCATATGAGCCACAGAATCTTAGCTCATGCAACAAGATCAATGATG- 1219
Query 1041 AA-CTGAGACAGGAATTAAGATTAGAGCTCGACGAGCACAAGCCCCGGGTTGTGCTGAGC 1099
|| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 AATCTAAGAGAGGAATTAAGATTAGAGCTCGACGAGCACAAGCCCCGGGTTGTGCTGAGC 1279
Query 1100 AGTTTGTAATGCAAGGTGATGCCTCAAGAAGGTTGCGTCTTCAGGTTAACCTTAACACCC 1159
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1280 AGTTTGTAATGCAGGGCGATGCCTCAAGAAGGCTGCGTCTTCAGGTTAACCTTAACAGCC 1339
Query 1160 ACAAGTCAGAAACCGACAGTACACAACTCCAATGTATCAAAAAAGATGTTAAGGACACAA 1219
||||||||||||| |||||||||||||| |||| |||||| ||||| |||||||||||||
Sbjct 1340 ACAAGTCAGAAACTGACAGTACACAACTTCAATTTATCAAGAAAGAGGTTAAGGACACAA 1399
Query 1220 CAACGGAAACTAT-AGCGAAAGGATGTGGAAATTTCACCAGATCAAAAAGCAGGACTAGT 1278
||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1400 CAACGGAAACTATGA-CGAAAGGATGTGGAAATTTCACAAGATCAAAGAGCAGGACTAGT 1458
Query 1279 TTCATATTCAAGAAAATTGCAGCTATGGGATGTTCATACAGAGGGTTTTTTAGAG-CAGG 1337
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| | ||
Sbjct 1459 TTCATATTCAAGAAAATTGCAGCCATGGGATGTTCATACAGAGGGCTTTTCAGAGTC-GG 1517
Query 1338 CGTGGTAGCGGCTGTGTTTGTGATGTCGGTTTGCAGTCTGGTCGCATAA 1386
|||||||||| ||||| |||||||||||| |||||||| |||||||||
Sbjct 1518 TGTGGTAGCGGTTGTGTGTGTGATGTCGGTCTGCAGTCTAGTCGCATAA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5